miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25067 3' -53.9 NC_005336.1 + 26497 0.66 0.964234
Target:  5'- --cGuCGGCGuCGGuGCUgCGGUCgccGCg -3'
miRNA:   3'- gaaCuGCCGC-GCCuUGA-GCCAGaa-CG- -5'
25067 3' -53.9 NC_005336.1 + 68899 0.66 0.964234
Target:  5'- --aGACcauccGCGCGaucgcGAGCUCGGUCgcGCg -3'
miRNA:   3'- gaaCUGc----CGCGC-----CUUGAGCCAGaaCG- -5'
25067 3' -53.9 NC_005336.1 + 99977 0.66 0.964234
Target:  5'- cCUUGcacuccgcGCGGUaGCGGucCUUGGaCUUGCg -3'
miRNA:   3'- -GAAC--------UGCCG-CGCCuuGAGCCaGAACG- -5'
25067 3' -53.9 NC_005336.1 + 94275 0.66 0.964234
Target:  5'- --cGACGGCGCGGuguccagcccGCUgGG-CgugGCg -3'
miRNA:   3'- gaaCUGCCGCGCCu---------UGAgCCaGaa-CG- -5'
25067 3' -53.9 NC_005336.1 + 79352 0.66 0.964234
Target:  5'- -cUGGCGGgcauCGUGG-GCUCGGUCa--- -3'
miRNA:   3'- gaACUGCC----GCGCCuUGAGCCAGaacg -5'
25067 3' -53.9 NC_005336.1 + 134023 0.66 0.964234
Target:  5'- --cGugGGUGCGGuGCgCGGcCgccUGCg -3'
miRNA:   3'- gaaCugCCGCGCCuUGaGCCaGa--ACG- -5'
25067 3' -53.9 NC_005336.1 + 75680 0.66 0.960768
Target:  5'- --cGcACGGCaaacucguGCGcGACUCGGUcCUUGCc -3'
miRNA:   3'- gaaC-UGCCG--------CGCcUUGAGCCA-GAACG- -5'
25067 3' -53.9 NC_005336.1 + 88341 0.66 0.960768
Target:  5'- --cGACGGUGUaGAGCaUGGUCgcGCg -3'
miRNA:   3'- gaaCUGCCGCGcCUUGaGCCAGaaCG- -5'
25067 3' -53.9 NC_005336.1 + 99206 0.66 0.957077
Target:  5'- --cGACGGCGCGcccGCgCGGcUCaUGCg -3'
miRNA:   3'- gaaCUGCCGCGCcu-UGaGCC-AGaACG- -5'
25067 3' -53.9 NC_005336.1 + 15764 0.66 0.957077
Target:  5'- --gGGCGGCGCGcacGGCgcgCGuGUgCUUGCg -3'
miRNA:   3'- gaaCUGCCGCGCc--UUGa--GC-CA-GAACG- -5'
25067 3' -53.9 NC_005336.1 + 108629 0.66 0.953156
Target:  5'- -aUGAUGGCGCGcGAuggCGGcCU-GCg -3'
miRNA:   3'- gaACUGCCGCGC-CUugaGCCaGAaCG- -5'
25067 3' -53.9 NC_005336.1 + 58370 0.66 0.953156
Target:  5'- --cGACGucugguuCGCGGcguACUCGGUCgaGCu -3'
miRNA:   3'- gaaCUGCc------GCGCCu--UGAGCCAGaaCG- -5'
25067 3' -53.9 NC_005336.1 + 117569 0.66 0.953156
Target:  5'- -gUGACcGCuGCGGAuaacaACUCGGcCUgUGCg -3'
miRNA:   3'- gaACUGcCG-CGCCU-----UGAGCCaGA-ACG- -5'
25067 3' -53.9 NC_005336.1 + 96541 0.66 0.949001
Target:  5'- --cGACGGCcgcaCGGAACUC-GUCUUcguccGCg -3'
miRNA:   3'- gaaCUGCCGc---GCCUUGAGcCAGAA-----CG- -5'
25067 3' -53.9 NC_005336.1 + 8994 0.66 0.948572
Target:  5'- --gGACGGCGCGGcgcgcguAGCUCGccgCgaagGCg -3'
miRNA:   3'- gaaCUGCCGCGCC-------UUGAGCca-Gaa--CG- -5'
25067 3' -53.9 NC_005336.1 + 57976 0.66 0.944607
Target:  5'- --cGGCGGCGCGGAcgccuucgccaACg-GGUacUGCa -3'
miRNA:   3'- gaaCUGCCGCGCCU-----------UGagCCAgaACG- -5'
25067 3' -53.9 NC_005336.1 + 87781 0.66 0.944607
Target:  5'- --cGAUcGCGCGGAGCcCGGaCUcGCg -3'
miRNA:   3'- gaaCUGcCGCGCCUUGaGCCaGAaCG- -5'
25067 3' -53.9 NC_005336.1 + 97900 0.67 0.939973
Target:  5'- ----uCGGCGCGGAGa-CGGUCUUu- -3'
miRNA:   3'- gaacuGCCGCGCCUUgaGCCAGAAcg -5'
25067 3' -53.9 NC_005336.1 + 47017 0.67 0.939973
Target:  5'- --cGACGGCGUGGucGCggagaaggaggCGGUggUGCg -3'
miRNA:   3'- gaaCUGCCGCGCCu-UGa----------GCCAgaACG- -5'
25067 3' -53.9 NC_005336.1 + 14665 0.67 0.939973
Target:  5'- -gUGuuGaCGCGGAGCUUGGUCa-GCa -3'
miRNA:   3'- gaACugCcGCGCCUUGAGCCAGaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.