miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25067 5' -56 NC_005336.1 + 14050 0.66 0.895691
Target:  5'- aUGCGGuccuuGAUGAGgUCUaugagcccgccggagGCGacUCGCGCg -3'
miRNA:   3'- aACGCUu----CUACUCgAGG---------------CGC--AGCGCG- -5'
25067 5' -56 NC_005336.1 + 9852 0.66 0.895691
Target:  5'- -gGCGAgcagccguggcGGAUGAGCUCgugcaccaccuccggCcGCGggCGCGCg -3'
miRNA:   3'- aaCGCU-----------UCUACUCGAG---------------G-CGCa-GCGCG- -5'
25067 5' -56 NC_005336.1 + 113434 0.66 0.893015
Target:  5'- -cGUGGAccucGcgGA-CUCCGCGgcgCGCGCg -3'
miRNA:   3'- aaCGCUU----CuaCUcGAGGCGCa--GCGCG- -5'
25067 5' -56 NC_005336.1 + 65900 0.66 0.893015
Target:  5'- gUGCGAGGccGUGcGGC-CCGUGggcgaGCGCg -3'
miRNA:   3'- aACGCUUC--UAC-UCGaGGCGCag---CGCG- -5'
25067 5' -56 NC_005336.1 + 95666 0.66 0.893015
Target:  5'- -cGCGuAGGUGuccAGCgCCGCGUagcggcccgUGCGCa -3'
miRNA:   3'- aaCGCuUCUAC---UCGaGGCGCA---------GCGCG- -5'
25067 5' -56 NC_005336.1 + 17299 0.66 0.893015
Target:  5'- cUGCGuuGAUugcGGGCgUCgGCGUCGUGa -3'
miRNA:   3'- aACGCuuCUA---CUCG-AGgCGCAGCGCg -5'
25067 5' -56 NC_005336.1 + 60810 0.66 0.893015
Target:  5'- -cGCGAGuccgacauGAUGuccuggaaCUCCGCG-CGCGCg -3'
miRNA:   3'- aaCGCUU--------CUACuc------GAGGCGCaGCGCG- -5'
25067 5' -56 NC_005336.1 + 94279 0.66 0.893015
Target:  5'- aUGCGcccGGGggGAGCaggUCCuuGUUGCGCg -3'
miRNA:   3'- aACGC---UUCuaCUCG---AGGcgCAGCGCG- -5'
25067 5' -56 NC_005336.1 + 102128 0.66 0.893015
Target:  5'- -cGCGAAGcgcGGGCUCauCGaCGcCGCGCc -3'
miRNA:   3'- aaCGCUUCua-CUCGAG--GC-GCaGCGCG- -5'
25067 5' -56 NC_005336.1 + 63744 0.66 0.893015
Target:  5'- -cGaCGucGAc-GGCUCCGCGgccuUCGCGCg -3'
miRNA:   3'- aaC-GCuuCUacUCGAGGCGC----AGCGCG- -5'
25067 5' -56 NC_005336.1 + 18712 0.66 0.893015
Target:  5'- -gGUGgcGGUGccGGCgCCG-GUCGCGCu -3'
miRNA:   3'- aaCGCuuCUAC--UCGaGGCgCAGCGCG- -5'
25067 5' -56 NC_005336.1 + 92011 0.66 0.893015
Target:  5'- -gGCGGGcuUGAGCUCCGCGaaguUgGgGCc -3'
miRNA:   3'- aaCGCUUcuACUCGAGGCGC----AgCgCG- -5'
25067 5' -56 NC_005336.1 + 30011 0.66 0.890301
Target:  5'- -cGCGAgcacgagaacgucaAGGUugugcacccccggGAGUUCCGCGgguaCGCGCc -3'
miRNA:   3'- aaCGCU--------------UCUA-------------CUCGAGGCGCa---GCGCG- -5'
25067 5' -56 NC_005336.1 + 109418 0.66 0.88893
Target:  5'- -cGCGAAGGccgccuUGAGCgugcgcagcagcuccUCgGUGUcCGCGCg -3'
miRNA:   3'- aaCGCUUCU------ACUCG---------------AGgCGCA-GCGCG- -5'
25067 5' -56 NC_005336.1 + 28642 0.66 0.88616
Target:  5'- gUGCGugccuGGuguUGAGCacgUgCGCGUCGgGCa -3'
miRNA:   3'- aACGCu----UCu--ACUCG---AgGCGCAGCgCG- -5'
25067 5' -56 NC_005336.1 + 95428 0.66 0.88616
Target:  5'- -gGCuGAAGAaGAGCcacUUGCgGUCGCGCg -3'
miRNA:   3'- aaCG-CUUCUaCUCGa--GGCG-CAGCGCG- -5'
25067 5' -56 NC_005336.1 + 89007 0.66 0.88616
Target:  5'- -cGUGAugcAGcUGcGCUCCGaCGcCGCGCa -3'
miRNA:   3'- aaCGCU---UCuACuCGAGGC-GCaGCGCG- -5'
25067 5' -56 NC_005336.1 + 99560 0.66 0.88616
Target:  5'- -cGCGuGGAgcucGAGC-CCGUGgaCGCGCg -3'
miRNA:   3'- aaCGCuUCUa---CUCGaGGCGCa-GCGCG- -5'
25067 5' -56 NC_005336.1 + 78287 0.66 0.88616
Target:  5'- -aGuCGAAGGUGGGCa--GCGUCaCGCu -3'
miRNA:   3'- aaC-GCUUCUACUCGaggCGCAGcGCG- -5'
25067 5' -56 NC_005336.1 + 3848 0.66 0.88616
Target:  5'- -aGCGccgccGccGAGCgcccgCgCGCGUCGCGCg -3'
miRNA:   3'- aaCGCuu---CuaCUCGa----G-GCGCAGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.