miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25069 5' -53.9 NC_005336.1 + 16384 0.66 0.966284
Target:  5'- gCAGC-UCGaccaCGUCCAGGcgcGcGCCGCc -3'
miRNA:   3'- gGUCGaAGC----GCAGGUCCuu-CaUGGCG- -5'
25069 5' -53.9 NC_005336.1 + 110398 0.66 0.966284
Target:  5'- gCAGCuUUCGCGcCUcGGA---GCCGCu -3'
miRNA:   3'- gGUCG-AAGCGCaGGuCCUucaUGGCG- -5'
25069 5' -53.9 NC_005336.1 + 57651 0.66 0.966284
Target:  5'- uCguGCacCGCGgaggCCGGGcGAGUGCUGUa -3'
miRNA:   3'- -GguCGaaGCGCa---GGUCC-UUCAUGGCG- -5'
25069 5' -53.9 NC_005336.1 + 39735 0.66 0.966284
Target:  5'- aCAGC-UCGCGUucgCCAGcucaAAGUucgccACCGCg -3'
miRNA:   3'- gGUCGaAGCGCA---GGUCc---UUCA-----UGGCG- -5'
25069 5' -53.9 NC_005336.1 + 42245 0.66 0.966284
Target:  5'- gCGGCgUCGCGgUCAGGAAGaagcacauggGCgGCg -3'
miRNA:   3'- gGUCGaAGCGCaGGUCCUUCa---------UGgCG- -5'
25069 5' -53.9 NC_005336.1 + 132137 0.66 0.966284
Target:  5'- --cGCUgCGCGUagugCGGGAGGU-CCGUg -3'
miRNA:   3'- gguCGAaGCGCAg---GUCCUUCAuGGCG- -5'
25069 5' -53.9 NC_005336.1 + 75900 0.66 0.966284
Target:  5'- gUCGGg--CGCGUCCucgaaGGcGAAGgugGCCGCg -3'
miRNA:   3'- -GGUCgaaGCGCAGG-----UC-CUUCa--UGGCG- -5'
25069 5' -53.9 NC_005336.1 + 101409 0.66 0.966284
Target:  5'- gCCuGCUUCGCGg-CGGuGgcGgacgcgGCCGCg -3'
miRNA:   3'- -GGuCGAAGCGCagGUC-CuuCa-----UGGCG- -5'
25069 5' -53.9 NC_005336.1 + 40274 0.66 0.966284
Target:  5'- aCCAGgUguggCGCG-CCGGcGgcGcGCCGCg -3'
miRNA:   3'- -GGUCgAa---GCGCaGGUC-CuuCaUGGCG- -5'
25069 5' -53.9 NC_005336.1 + 76988 0.66 0.966284
Target:  5'- aCCAGCgccggCGCaugaCCGGGugcGAG-ACCGCg -3'
miRNA:   3'- -GGUCGaa---GCGca--GGUCC---UUCaUGGCG- -5'
25069 5' -53.9 NC_005336.1 + 13265 0.66 0.964319
Target:  5'- gUCAGCgucaUCuCGgCCAGGcgcgcgucgccgccuAGGUGCCGCg -3'
miRNA:   3'- -GGUCGa---AGcGCaGGUCC---------------UUCAUGGCG- -5'
25069 5' -53.9 NC_005336.1 + 64510 0.66 0.962966
Target:  5'- -uGGUcgCGCG-CCAGGAcuccGGcGCCGCc -3'
miRNA:   3'- ggUCGaaGCGCaGGUCCU----UCaUGGCG- -5'
25069 5' -53.9 NC_005336.1 + 13021 0.66 0.962966
Target:  5'- aCGGacaCGCG-CCGGGAcagGCCGCg -3'
miRNA:   3'- gGUCgaaGCGCaGGUCCUucaUGGCG- -5'
25069 5' -53.9 NC_005336.1 + 43024 0.66 0.962966
Target:  5'- gCCGGCg--GCGUUCAGGAc--GCCGa -3'
miRNA:   3'- -GGUCGaagCGCAGGUCCUucaUGGCg -5'
25069 5' -53.9 NC_005336.1 + 95803 0.66 0.962966
Target:  5'- uCUGGCccagCGCGUCCugcguGGAca-GCCGCa -3'
miRNA:   3'- -GGUCGaa--GCGCAGGu----CCUucaUGGCG- -5'
25069 5' -53.9 NC_005336.1 + 59366 0.66 0.962966
Target:  5'- gUCGGCcugCGCGccgCCGGcAGcGUGCCGCa -3'
miRNA:   3'- -GGUCGaa-GCGCa--GGUCcUU-CAUGGCG- -5'
25069 5' -53.9 NC_005336.1 + 15680 0.66 0.962966
Target:  5'- aCGcGCgagUgGCGUCCgugggcucGGGcuGUACCGCg -3'
miRNA:   3'- gGU-CGa--AgCGCAGG--------UCCuuCAUGGCG- -5'
25069 5' -53.9 NC_005336.1 + 75158 0.66 0.962966
Target:  5'- uCCAGCggCGCGaagUCCGuGAAGgcCuCGCg -3'
miRNA:   3'- -GGUCGaaGCGC---AGGUcCUUCauG-GCG- -5'
25069 5' -53.9 NC_005336.1 + 105248 0.66 0.962966
Target:  5'- uUCAGCcUCGCGcCCGaGGAGUcACUGUu -3'
miRNA:   3'- -GGUCGaAGCGCaGGUcCUUCA-UGGCG- -5'
25069 5' -53.9 NC_005336.1 + 41768 0.66 0.962276
Target:  5'- gCCAccGCgagCGCGUCCAGGuugggcagguccAGgcCCGUg -3'
miRNA:   3'- -GGU--CGaa-GCGCAGGUCCu-----------UCauGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.