miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2507 3' -51 NC_001454.1 + 28085 0.66 0.80845
Target:  5'- -----aGGAUGCAUcCAGCCCAGgugaaGGCa -3'
miRNA:   3'- agggugUUUACGUA-GUCGGGUUa----CCG- -5'
2507 3' -51 NC_001454.1 + 2972 0.66 0.797083
Target:  5'- aCCCGagaAAAaGCAUCAGUuuCCAuuaaaacuuuaguGUGGCa -3'
miRNA:   3'- aGGGUg--UUUaCGUAGUCG--GGU-------------UACCG- -5'
2507 3' -51 NC_001454.1 + 3767 0.66 0.787602
Target:  5'- gUCCCugGGAUGCAgguaGGaCCAcuggagGGCg -3'
miRNA:   3'- -AGGGugUUUACGUag--UCgGGUua----CCG- -5'
2507 3' -51 NC_001454.1 + 6339 0.66 0.787602
Target:  5'- cUCCGCGAAUGC--UAGCCCGAa--- -3'
miRNA:   3'- aGGGUGUUUACGuaGUCGGGUUaccg -5'
2507 3' -51 NC_001454.1 + 25404 0.66 0.775807
Target:  5'- uUCCCACGccuuacaugugGA-GCuAUCAGCCgCAAaugggccUGGCa -3'
miRNA:   3'- -AGGGUGU-----------UUaCG-UAGUCGG-GUU-------ACCG- -5'
2507 3' -51 NC_001454.1 + 33202 0.66 0.766001
Target:  5'- uUUCUugAAGUGCGUgugcCAGCCUuAGUGGa -3'
miRNA:   3'- -AGGGugUUUACGUA----GUCGGG-UUACCg -5'
2507 3' -51 NC_001454.1 + 11547 0.66 0.762703
Target:  5'- aCCCGCAAucccgaagccuucagGCAgCAGCCCca-GGCc -3'
miRNA:   3'- aGGGUGUUua-------------CGUaGUCGGGuuaCCG- -5'
2507 3' -51 NC_001454.1 + 20507 0.67 0.720992
Target:  5'- gCCCAgAAAguaagGuCcgCAGCCCAguucgcgcacgAUGGCg -3'
miRNA:   3'- aGGGUgUUUa----C-GuaGUCGGGU-----------UACCG- -5'
2507 3' -51 NC_001454.1 + 17525 0.68 0.684933
Target:  5'- aCCCACAAugcuguuaagaGUGCucugccaGUUAGCCCcgcgagGGCg -3'
miRNA:   3'- aGGGUGUU-----------UACG-------UAGUCGGGuua---CCG- -5'
2507 3' -51 NC_001454.1 + 12703 0.68 0.650679
Target:  5'- aUCCCACAAAaaucCGUCGucGCCCucaGGCa -3'
miRNA:   3'- -AGGGUGUUUac--GUAGU--CGGGuuaCCG- -5'
2507 3' -51 NC_001454.1 + 7359 0.68 0.650679
Target:  5'- gUCCCAC---UGCAacucgCAGgCCAGUcGGCa -3'
miRNA:   3'- -AGGGUGuuuACGUa----GUCgGGUUA-CCG- -5'
2507 3' -51 NC_001454.1 + 4105 0.69 0.61507
Target:  5'- uUCCC-CAAGUGCAcCGGCuauaccgugCUAGUGGUu -3'
miRNA:   3'- -AGGGuGUUUACGUaGUCG---------GGUUACCG- -5'
2507 3' -51 NC_001454.1 + 2404 0.7 0.533092
Target:  5'- cCCCACucAUGCcaauaAGCCCAG-GGCc -3'
miRNA:   3'- aGGGUGuuUACGuag--UCGGGUUaCCG- -5'
2507 3' -51 NC_001454.1 + 10819 1.12 0.000762
Target:  5'- gUCCCACAAAUGCAUCAGCCCAAUGGCc -3'
miRNA:   3'- -AGGGUGUUUACGUAGUCGGGUUACCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.