Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2507 | 3' | -51 | NC_001454.1 | + | 28085 | 0.66 | 0.80845 |
Target: 5'- -----aGGAUGCAUcCAGCCCAGgugaaGGCa -3' miRNA: 3'- agggugUUUACGUA-GUCGGGUUa----CCG- -5' |
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2507 | 3' | -51 | NC_001454.1 | + | 2972 | 0.66 | 0.797083 |
Target: 5'- aCCCGagaAAAaGCAUCAGUuuCCAuuaaaacuuuaguGUGGCa -3' miRNA: 3'- aGGGUg--UUUaCGUAGUCG--GGU-------------UACCG- -5' |
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2507 | 3' | -51 | NC_001454.1 | + | 3767 | 0.66 | 0.787602 |
Target: 5'- gUCCCugGGAUGCAgguaGGaCCAcuggagGGCg -3' miRNA: 3'- -AGGGugUUUACGUag--UCgGGUua----CCG- -5' |
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2507 | 3' | -51 | NC_001454.1 | + | 6339 | 0.66 | 0.787602 |
Target: 5'- cUCCGCGAAUGC--UAGCCCGAa--- -3' miRNA: 3'- aGGGUGUUUACGuaGUCGGGUUaccg -5' |
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2507 | 3' | -51 | NC_001454.1 | + | 25404 | 0.66 | 0.775807 |
Target: 5'- uUCCCACGccuuacaugugGA-GCuAUCAGCCgCAAaugggccUGGCa -3' miRNA: 3'- -AGGGUGU-----------UUaCG-UAGUCGG-GUU-------ACCG- -5' |
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2507 | 3' | -51 | NC_001454.1 | + | 33202 | 0.66 | 0.766001 |
Target: 5'- uUUCUugAAGUGCGUgugcCAGCCUuAGUGGa -3' miRNA: 3'- -AGGGugUUUACGUA----GUCGGG-UUACCg -5' |
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2507 | 3' | -51 | NC_001454.1 | + | 11547 | 0.66 | 0.762703 |
Target: 5'- aCCCGCAAucccgaagccuucagGCAgCAGCCCca-GGCc -3' miRNA: 3'- aGGGUGUUua-------------CGUaGUCGGGuuaCCG- -5' |
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2507 | 3' | -51 | NC_001454.1 | + | 20507 | 0.67 | 0.720992 |
Target: 5'- gCCCAgAAAguaagGuCcgCAGCCCAguucgcgcacgAUGGCg -3' miRNA: 3'- aGGGUgUUUa----C-GuaGUCGGGU-----------UACCG- -5' |
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2507 | 3' | -51 | NC_001454.1 | + | 17525 | 0.68 | 0.684933 |
Target: 5'- aCCCACAAugcuguuaagaGUGCucugccaGUUAGCCCcgcgagGGCg -3' miRNA: 3'- aGGGUGUU-----------UACG-------UAGUCGGGuua---CCG- -5' |
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2507 | 3' | -51 | NC_001454.1 | + | 7359 | 0.68 | 0.650679 |
Target: 5'- gUCCCAC---UGCAacucgCAGgCCAGUcGGCa -3' miRNA: 3'- -AGGGUGuuuACGUa----GUCgGGUUA-CCG- -5' |
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2507 | 3' | -51 | NC_001454.1 | + | 12703 | 0.68 | 0.650679 |
Target: 5'- aUCCCACAAAaaucCGUCGucGCCCucaGGCa -3' miRNA: 3'- -AGGGUGUUUac--GUAGU--CGGGuuaCCG- -5' |
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2507 | 3' | -51 | NC_001454.1 | + | 4105 | 0.69 | 0.61507 |
Target: 5'- uUCCC-CAAGUGCAcCGGCuauaccgugCUAGUGGUu -3' miRNA: 3'- -AGGGuGUUUACGUaGUCG---------GGUUACCG- -5' |
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2507 | 3' | -51 | NC_001454.1 | + | 2404 | 0.7 | 0.533092 |
Target: 5'- cCCCACucAUGCcaauaAGCCCAG-GGCc -3' miRNA: 3'- aGGGUGuuUACGuag--UCGGGUUaCCG- -5' |
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2507 | 3' | -51 | NC_001454.1 | + | 10819 | 1.12 | 0.000762 |
Target: 5'- gUCCCACAAAUGCAUCAGCCCAAUGGCc -3' miRNA: 3'- -AGGGUGUUUACGUAGUCGGGUUACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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