miRNA display CGI


Results 1 - 20 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25070 5' -53 NC_005336.1 + 92144 0.66 0.978221
Target:  5'- uCCGCGuccucGAGGAAGAgaGCGUCCagCGGg -3'
miRNA:   3'- cGGUGC-----UUCCUUCUg-UGCAGGa-GCUg -5'
25070 5' -53 NC_005336.1 + 75249 0.66 0.978221
Target:  5'- uGUCGCGGAuGAGGgccaGCAgGUCCUCGuCc -3'
miRNA:   3'- -CGGUGCUUcCUUC----UGUgCAGGAGCuG- -5'
25070 5' -53 NC_005336.1 + 9818 0.66 0.978221
Target:  5'- uCCACGAAGGc-GACGCGguugccgagCCUgGAg -3'
miRNA:   3'- cGGUGCUUCCuuCUGUGCa--------GGAgCUg -5'
25070 5' -53 NC_005336.1 + 101804 0.66 0.978221
Target:  5'- cGCCGuCGcuccucGGGGAGGcggaACACGUCCUCcaGCg -3'
miRNA:   3'- -CGGU-GC------UUCCUUC----UGUGCAGGAGc-UG- -5'
25070 5' -53 NC_005336.1 + 118586 0.66 0.977984
Target:  5'- uGCC-CGAGGGAgaAGauggagaccuucuGCugGaCCUCGGCc -3'
miRNA:   3'- -CGGuGCUUCCU--UC-------------UGugCaGGAGCUG- -5'
25070 5' -53 NC_005336.1 + 82390 0.66 0.977984
Target:  5'- gGCgCACGAGGGGuGGAUgaucuucauuaggGCGUUgUCGAUg -3'
miRNA:   3'- -CG-GUGCUUCCU-UCUG-------------UGCAGgAGCUG- -5'
25070 5' -53 NC_005336.1 + 5702 0.66 0.976772
Target:  5'- cGCCGCGGAGGccaGCgcgagcgcgucagcuGCGUCCgcgUGGCa -3'
miRNA:   3'- -CGGUGCUUCCuucUG---------------UGCAGGa--GCUG- -5'
25070 5' -53 NC_005336.1 + 103449 0.66 0.975767
Target:  5'- gGCCGCGGGcGu--GCACGUCUgCGACg -3'
miRNA:   3'- -CGGUGCUUcCuucUGUGCAGGaGCUG- -5'
25070 5' -53 NC_005336.1 + 109620 0.66 0.975767
Target:  5'- aCCGCGugcGcGGcCACGUCCUCGAg -3'
miRNA:   3'- cGGUGCuucCuUCuGUGCAGGAGCUg -5'
25070 5' -53 NC_005336.1 + 93968 0.66 0.975767
Target:  5'- uCCACGucgccGGAGGugGCG-CCUCcACg -3'
miRNA:   3'- cGGUGCuu---CCUUCugUGCaGGAGcUG- -5'
25070 5' -53 NC_005336.1 + 50128 0.66 0.975767
Target:  5'- gGCCACcggcguGAAGGccGugACGUCgUCG-Ca -3'
miRNA:   3'- -CGGUG------CUUCCuuCugUGCAGgAGCuG- -5'
25070 5' -53 NC_005336.1 + 131834 0.66 0.973116
Target:  5'- aCCACGuggcGGucgccGGCGCGUUgUCGACa -3'
miRNA:   3'- cGGUGCuu--CCuu---CUGUGCAGgAGCUG- -5'
25070 5' -53 NC_005336.1 + 65344 0.66 0.973116
Target:  5'- cGCCGCGcGGGcGAG-CGCGUCuCUgCGAg -3'
miRNA:   3'- -CGGUGCuUCC-UUCuGUGCAG-GA-GCUg -5'
25070 5' -53 NC_005336.1 + 72498 0.66 0.973116
Target:  5'- uCCGCGAAGaGcuuGACgAUGUCCgcgCGGCg -3'
miRNA:   3'- cGGUGCUUC-Cuu-CUG-UGCAGGa--GCUG- -5'
25070 5' -53 NC_005336.1 + 89402 0.66 0.973116
Target:  5'- cGCCGCGcagccggcGGGcgacGAGGCagACGUCCgcggCGACa -3'
miRNA:   3'- -CGGUGCu-------UCC----UUCUG--UGCAGGa---GCUG- -5'
25070 5' -53 NC_005336.1 + 24135 0.66 0.973116
Target:  5'- cGUCACGucgcAGaAGGGCACcUCCUCGAg -3'
miRNA:   3'- -CGGUGCu---UCcUUCUGUGcAGGAGCUg -5'
25070 5' -53 NC_005336.1 + 40846 0.66 0.97284
Target:  5'- cGCCAUccaGGGGAAGuucagguACGCGuucauggcguagUCCUCGGCg -3'
miRNA:   3'- -CGGUGc--UUCCUUC-------UGUGC------------AGGAGCUG- -5'
25070 5' -53 NC_005336.1 + 122685 0.66 0.970261
Target:  5'- uUCGCGAGcgcGGcuGGGC-CGUCCUCGAg -3'
miRNA:   3'- cGGUGCUU---CCu-UCUGuGCAGGAGCUg -5'
25070 5' -53 NC_005336.1 + 59558 0.66 0.970261
Target:  5'- aCCAC-AGGGAGGGCGCG-CCgcCGAg -3'
miRNA:   3'- cGGUGcUUCCUUCUGUGCaGGa-GCUg -5'
25070 5' -53 NC_005336.1 + 135916 0.66 0.970261
Target:  5'- uGgCGCGgcGcGggGcCGCGgCCUCGGCg -3'
miRNA:   3'- -CgGUGCuuC-CuuCuGUGCaGGAGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.