miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25071 5' -54.3 NC_005336.1 + 53199 0.66 0.941259
Target:  5'- ----cGugGuGCGcAUCcgcaAGGaCGCGGCCa -3'
miRNA:   3'- aauaaCugC-CGCuUAG----UCC-GCGCCGG- -5'
25071 5' -54.3 NC_005336.1 + 63288 0.66 0.941259
Target:  5'- ----aGAgucCGGCGAcgCAGaGgGCGGCg -3'
miRNA:   3'- aauaaCU---GCCGCUuaGUC-CgCGCCGg -5'
25071 5' -54.3 NC_005336.1 + 43698 0.66 0.941259
Target:  5'- ----aGGcCGcGCGuugCGGGCGCuGGCCg -3'
miRNA:   3'- aauaaCU-GC-CGCuuaGUCCGCG-CCGG- -5'
25071 5' -54.3 NC_005336.1 + 125709 0.66 0.938366
Target:  5'- ----cGGCGGCGcucuucgucagcggaGAcCAggugcucgaggcGGCGCGGCCg -3'
miRNA:   3'- aauaaCUGCCGC---------------UUaGU------------CCGCGCCGG- -5'
25071 5' -54.3 NC_005336.1 + 91299 0.66 0.938366
Target:  5'- aUGUUGGCGGaGAcGUCuacgaacugcaugccGGGCGaGGCCa -3'
miRNA:   3'- aAUAACUGCCgCU-UAG---------------UCCGCgCCGG- -5'
25071 5' -54.3 NC_005336.1 + 128232 0.66 0.936886
Target:  5'- ----cGAUGGCGGAcgugugugucuaccgCGcGGCGCuGGCCg -3'
miRNA:   3'- aauaaCUGCCGCUUa--------------GU-CCGCG-CCGG- -5'
25071 5' -54.3 NC_005336.1 + 87950 0.66 0.936388
Target:  5'- ----cGGCGGCGGAcugCAcGGCGCcgagcGCCu -3'
miRNA:   3'- aauaaCUGCCGCUUa--GU-CCGCGc----CGG- -5'
25071 5' -54.3 NC_005336.1 + 40011 0.66 0.936388
Target:  5'- ---cUGACGGCGAAgUCGcGCccgaaGCGGCg -3'
miRNA:   3'- aauaACUGCCGCUU-AGUcCG-----CGCCGg -5'
25071 5' -54.3 NC_005336.1 + 89991 0.66 0.93437
Target:  5'- --cUUGACGGCGucgagcugcuucUCGGaGCGCGcGCUc -3'
miRNA:   3'- aauAACUGCCGCuu----------AGUC-CGCGC-CGG- -5'
25071 5' -54.3 NC_005336.1 + 42121 0.66 0.931267
Target:  5'- -----aGCGuGCGGAUCuuGGGCGUGGUg -3'
miRNA:   3'- aauaacUGC-CGCUUAG--UCCGCGCCGg -5'
25071 5' -54.3 NC_005336.1 + 73337 0.66 0.931267
Target:  5'- ------uUGGC----CAGGCGCGGCCg -3'
miRNA:   3'- aauaacuGCCGcuuaGUCCGCGCCGG- -5'
25071 5' -54.3 NC_005336.1 + 91340 0.66 0.931267
Target:  5'- ---aUGACGGCGuc-CAGcUGCGcGCCg -3'
miRNA:   3'- aauaACUGCCGCuuaGUCcGCGC-CGG- -5'
25071 5' -54.3 NC_005336.1 + 105671 0.66 0.931267
Target:  5'- ----cGGCGGCG-AUCGGcGUGCuGCUg -3'
miRNA:   3'- aauaaCUGCCGCuUAGUC-CGCGcCGG- -5'
25071 5' -54.3 NC_005336.1 + 37241 0.66 0.931267
Target:  5'- -----cGCGGUGGccaGGuGCGCGGCCu -3'
miRNA:   3'- aauaacUGCCGCUuagUC-CGCGCCGG- -5'
25071 5' -54.3 NC_005336.1 + 78161 0.66 0.931267
Target:  5'- ----cGGCGcGCGcg-CGGGCGUGGUg -3'
miRNA:   3'- aauaaCUGC-CGCuuaGUCCGCGCCGg -5'
25071 5' -54.3 NC_005336.1 + 62782 0.66 0.925896
Target:  5'- ---aUGAgcGCGGAUC--GCGCGGCCg -3'
miRNA:   3'- aauaACUgcCGCUUAGucCGCGCCGG- -5'
25071 5' -54.3 NC_005336.1 + 83987 0.66 0.925896
Target:  5'- -aGUUG-CaGGCGGAcacgCGGGCGcCGGCg -3'
miRNA:   3'- aaUAACuG-CCGCUUa---GUCCGC-GCCGg -5'
25071 5' -54.3 NC_005336.1 + 124139 0.66 0.925896
Target:  5'- ---cUGACGcgaucgcgcaGCGAG-CAGcCGCGGCCg -3'
miRNA:   3'- aauaACUGC----------CGCUUaGUCcGCGCCGG- -5'
25071 5' -54.3 NC_005336.1 + 104198 0.66 0.922552
Target:  5'- ----gGACGGCGucuuccagaaggaaaAccugGUCuGGCGCGGCa -3'
miRNA:   3'- aauaaCUGCCGC---------------U----UAGuCCGCGCCGg -5'
25071 5' -54.3 NC_005336.1 + 99729 0.66 0.920273
Target:  5'- ----aGGCGGCcg--CcGGCGCGGCg -3'
miRNA:   3'- aauaaCUGCCGcuuaGuCCGCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.