miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25072 3' -61.8 NC_005336.1 + 15736 0.66 0.676827
Target:  5'- aCGgcGUCCGcGGGaGGCcgcGUCGCCa -3'
miRNA:   3'- aGCuuCAGGCuCCCgCCGu--CGGCGGg -5'
25072 3' -61.8 NC_005336.1 + 122823 0.66 0.676827
Target:  5'- ----cGUCaCG-GGGCGGCAGaCCGUgCu -3'
miRNA:   3'- agcuuCAG-GCuCCCGCCGUC-GGCGgG- -5'
25072 3' -61.8 NC_005336.1 + 40066 0.66 0.676827
Target:  5'- gCGAGcaaUCCGccGcGcCGGCGGCCGCCUc -3'
miRNA:   3'- aGCUUc--AGGCucC-C-GCCGUCGGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 3874 0.66 0.676827
Target:  5'- gUCGcgcgCCGAGGccGCGGCcccgcGCCGCgCCa -3'
miRNA:   3'- -AGCuucaGGCUCC--CGCCGu----CGGCG-GG- -5'
25072 3' -61.8 NC_005336.1 + 3874 0.66 0.676827
Target:  5'- gUCGcgcgCCGAGGccGCGGCcccgcGCCGCgCCa -3'
miRNA:   3'- -AGCuucaGGCUCC--CGCCGu----CGGCG-GG- -5'
25072 3' -61.8 NC_005336.1 + 117029 0.66 0.676827
Target:  5'- gUCGGccUCCGAgaGGuGCGGCAuuCCGUCCa -3'
miRNA:   3'- -AGCUucAGGCU--CC-CGCCGUc-GGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 125727 0.66 0.676827
Target:  5'- gCGGAGaccaggugCuCGAGGcggcGCGGCcGCCGCCa -3'
miRNA:   3'- aGCUUCa-------G-GCUCC----CGCCGuCGGCGGg -5'
25072 3' -61.8 NC_005336.1 + 35702 0.66 0.676827
Target:  5'- aCGAAGUCCGugccgcuGcGGCucgcGCAGCggauguccaCGCCCg -3'
miRNA:   3'- aGCUUCAGGCu------C-CCGc---CGUCG---------GCGGG- -5'
25072 3' -61.8 NC_005336.1 + 40282 0.66 0.67585
Target:  5'- aUCGAggcgcgcGGUCCGcuauccaGCGGCGcGCCGaCCCg -3'
miRNA:   3'- -AGCU-------UCAGGCucc----CGCCGU-CGGC-GGG- -5'
25072 3' -61.8 NC_005336.1 + 45703 0.66 0.670962
Target:  5'- gCGAAcUCCGAGGccGCGuGCAcgggcgaggcaccgcGCCGCaCCa -3'
miRNA:   3'- aGCUUcAGGCUCC--CGC-CGU---------------CGGCG-GG- -5'
25072 3' -61.8 NC_005336.1 + 72116 0.66 0.667047
Target:  5'- uUCGAGGcUCUG-GaGCcGCuGCCGCCCg -3'
miRNA:   3'- -AGCUUC-AGGCuCcCGcCGuCGGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 16724 0.66 0.667047
Target:  5'- cUCGAcGGUCaCGucuGCGGCcGCCGCCa -3'
miRNA:   3'- -AGCU-UCAG-GCuccCGCCGuCGGCGGg -5'
25072 3' -61.8 NC_005336.1 + 69365 0.66 0.667047
Target:  5'- gCGuAGUCCGcGGGCaGCGaguGCCGCa- -3'
miRNA:   3'- aGCuUCAGGCuCCCGcCGU---CGGCGgg -5'
25072 3' -61.8 NC_005336.1 + 98649 0.66 0.664108
Target:  5'- gCGGAGUCCGccuccGcgauccgcgcacacGGCaGCGGCgCGCCCu -3'
miRNA:   3'- aGCUUCAGGCu----C--------------CCGcCGUCG-GCGGG- -5'
25072 3' -61.8 NC_005336.1 + 38180 0.66 0.657241
Target:  5'- gUCGAcga-CGAGGGcCGcGCGGUcaCGCCCg -3'
miRNA:   3'- -AGCUucagGCUCCC-GC-CGUCG--GCGGG- -5'
25072 3' -61.8 NC_005336.1 + 34808 0.66 0.657241
Target:  5'- cUCGGAGUCgCGcAGGaucuCGGCgacggugaaGGCCGCgCCg -3'
miRNA:   3'- -AGCUUCAG-GC-UCCc---GCCG---------UCGGCG-GG- -5'
25072 3' -61.8 NC_005336.1 + 76416 0.66 0.657241
Target:  5'- cUUGAAGUCugCGAGGaUGGCGGagaaCGCCa -3'
miRNA:   3'- -AGCUUCAG--GCUCCcGCCGUCg---GCGGg -5'
25072 3' -61.8 NC_005336.1 + 87291 0.66 0.657241
Target:  5'- -gGAAGUgCGAGuGCaGGCAgcagauguGCCGUCCg -3'
miRNA:   3'- agCUUCAgGCUCcCG-CCGU--------CGGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 10601 0.66 0.657241
Target:  5'- gCGAGGggaggaCGAccGcGGCGGCGcGCgCGCCCu -3'
miRNA:   3'- aGCUUCag----GCU--C-CCGCCGU-CG-GCGGG- -5'
25072 3' -61.8 NC_005336.1 + 37104 0.66 0.657241
Target:  5'- -gGAAcUCCGAgGGGCuGUuGCCGCCg -3'
miRNA:   3'- agCUUcAGGCU-CCCGcCGuCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.