miRNA display CGI


Results 21 - 40 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25072 3' -61.8 NC_005336.1 + 87291 0.66 0.657241
Target:  5'- -gGAAGUgCGAGuGCaGGCAgcagauguGCCGUCCg -3'
miRNA:   3'- agCUUCAgGCUCcCG-CCGU--------CGGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 34808 0.66 0.657241
Target:  5'- cUCGGAGUCgCGcAGGaucuCGGCgacggugaaGGCCGCgCCg -3'
miRNA:   3'- -AGCUUCAG-GC-UCCc---GCCG---------UCGGCG-GG- -5'
25072 3' -61.8 NC_005336.1 + 15494 0.66 0.65626
Target:  5'- gCGggGa--GAGcaguaccGGCGGCGGCUGCgCCg -3'
miRNA:   3'- aGCuuCaggCUC-------CCGCCGUCGGCG-GG- -5'
25072 3' -61.8 NC_005336.1 + 37654 0.66 0.647417
Target:  5'- cUCGguGUCCGGcGGcGCGGC-GUCgaugaGCCCg -3'
miRNA:   3'- -AGCuuCAGGCU-CC-CGCCGuCGG-----CGGG- -5'
25072 3' -61.8 NC_005336.1 + 71333 0.66 0.647417
Target:  5'- cUCGcaGAG-CCGcGuccGCGGCGGCgCGCCCg -3'
miRNA:   3'- -AGC--UUCaGGCuCc--CGCCGUCG-GCGGG- -5'
25072 3' -61.8 NC_005336.1 + 30489 0.66 0.647417
Target:  5'- gCGuGGcCCucGcGGCGGCGGCCGCg- -3'
miRNA:   3'- aGCuUCaGGcuC-CCGCCGUCGGCGgg -5'
25072 3' -61.8 NC_005336.1 + 59427 0.66 0.647417
Target:  5'- aCGguGUCCGcGGaGCGGCuggcGCUGCgCg -3'
miRNA:   3'- aGCuuCAGGCuCC-CGCCGu---CGGCGgG- -5'
25072 3' -61.8 NC_005336.1 + 105541 0.66 0.647417
Target:  5'- gCGugcgCCGGGGGCaGGCucCCGUCCa -3'
miRNA:   3'- aGCuucaGGCUCCCG-CCGucGGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 18008 0.66 0.637581
Target:  5'- gCGGuacugcaccAGcUCCGAGGGCGaGaaggagAGCCGCuCCa -3'
miRNA:   3'- aGCU---------UC-AGGCUCCCGC-Cg-----UCGGCG-GG- -5'
25072 3' -61.8 NC_005336.1 + 102887 0.66 0.637581
Target:  5'- aUGGAGUCCGAGuGCGGCA--UGUUCa -3'
miRNA:   3'- aGCUUCAGGCUCcCGCCGUcgGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 7113 0.66 0.637581
Target:  5'- gCGAAGUgCacgcaGAGGuGCaGCGGCgugCGCCCg -3'
miRNA:   3'- aGCUUCA-Gg----CUCC-CGcCGUCG---GCGGG- -5'
25072 3' -61.8 NC_005336.1 + 90860 0.66 0.637581
Target:  5'- cUCGggGUCCGAGuuGCacacCAGCCGCa- -3'
miRNA:   3'- -AGCuuCAGGCUCc-CGcc--GUCGGCGgg -5'
25072 3' -61.8 NC_005336.1 + 9812 0.66 0.627742
Target:  5'- gCGAGGUCCacGAaGGCGacGCGGuuGCCg -3'
miRNA:   3'- aGCUUCAGG--CUcCCGC--CGUCggCGGg -5'
25072 3' -61.8 NC_005336.1 + 16388 0.66 0.627742
Target:  5'- cUCGAccacGUCC-AGGcGCGcGCcGCCGUCCa -3'
miRNA:   3'- -AGCUu---CAGGcUCC-CGC-CGuCGGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 56749 0.66 0.621839
Target:  5'- gUCGAAGaUCCGGcacGGGUucgugcgcaugcaccGGCAGC-GCCUg -3'
miRNA:   3'- -AGCUUC-AGGCU---CCCG---------------CCGUCGgCGGG- -5'
25072 3' -61.8 NC_005336.1 + 35110 0.66 0.617906
Target:  5'- cUCGggGUgCGAGaGCGcGUAGCagCGCCg -3'
miRNA:   3'- -AGCuuCAgGCUCcCGC-CGUCG--GCGGg -5'
25072 3' -61.8 NC_005336.1 + 44069 0.66 0.617906
Target:  5'- aCGAGGgcaucuaCCGc--GCGGC-GCCGCCCa -3'
miRNA:   3'- aGCUUCa------GGCuccCGCCGuCGGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 9653 0.66 0.616922
Target:  5'- gCGAGcgcugcGUCCGAGaGcgccugcgcggccGCGGCGGCgGCCUc -3'
miRNA:   3'- aGCUU------CAGGCUC-C-------------CGCCGUCGgCGGG- -5'
25072 3' -61.8 NC_005336.1 + 3192 0.67 0.608079
Target:  5'- cCGcAGccacUCCGAGcGCGGCcgcgcGGCCGCCg -3'
miRNA:   3'- aGCuUC----AGGCUCcCGCCG-----UCGGCGGg -5'
25072 3' -61.8 NC_005336.1 + 13588 0.67 0.608079
Target:  5'- -----cUCCGGGucGUGGCGGCCGCUCu -3'
miRNA:   3'- agcuucAGGCUCc-CGCCGUCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.