miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25072 3' -61.8 NC_005336.1 + 227 0.72 0.307404
Target:  5'- -gGGAGUCgGGuggucGGGUGGCAguGCCGUCCg -3'
miRNA:   3'- agCUUCAGgCU-----CCCGCCGU--CGGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 227 0.72 0.307404
Target:  5'- -gGGAGUCgGGuggucGGGUGGCAguGCCGUCCg -3'
miRNA:   3'- agCUUCAGgCU-----CCCGCCGU--CGGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 453 0.67 0.569003
Target:  5'- cUCGcgugCCGcGGGCGGCcGCgCGUCCg -3'
miRNA:   3'- -AGCuucaGGCuCCCGCCGuCG-GCGGG- -5'
25072 3' -61.8 NC_005336.1 + 453 0.67 0.569003
Target:  5'- cUCGcgugCCGcGGGCGGCcGCgCGUCCg -3'
miRNA:   3'- -AGCuucaGGCuCCCGCCGuCG-GCGGG- -5'
25072 3' -61.8 NC_005336.1 + 669 0.68 0.540105
Target:  5'- gCGAAguGUCgGAGaGGCGGagAGCUGaCCCg -3'
miRNA:   3'- aGCUU--CAGgCUC-CCGCCg-UCGGC-GGG- -5'
25072 3' -61.8 NC_005336.1 + 669 0.68 0.540105
Target:  5'- gCGAAguGUCgGAGaGGCGGagAGCUGaCCCg -3'
miRNA:   3'- aGCUU--CAGgCUC-CCGCCg-UCGGC-GGG- -5'
25072 3' -61.8 NC_005336.1 + 1002 0.73 0.281105
Target:  5'- -aGAGGUCCucuGGCGGuCGGCCGCuCCg -3'
miRNA:   3'- agCUUCAGGcucCCGCC-GUCGGCG-GG- -5'
25072 3' -61.8 NC_005336.1 + 1002 0.73 0.281105
Target:  5'- -aGAGGUCCucuGGCGGuCGGCCGCuCCg -3'
miRNA:   3'- agCUUCAGGcucCCGCC-GUCGGCG-GG- -5'
25072 3' -61.8 NC_005336.1 + 1034 0.7 0.413829
Target:  5'- cCGcGGU-CGcGGGCGGCGGCcCGUCCc -3'
miRNA:   3'- aGCuUCAgGCuCCCGCCGUCG-GCGGG- -5'
25072 3' -61.8 NC_005336.1 + 1034 0.7 0.413829
Target:  5'- cCGcGGU-CGcGGGCGGCGGCcCGUCCc -3'
miRNA:   3'- aGCuUCAgGCuCCCGCCGUCG-GCGGG- -5'
25072 3' -61.8 NC_005336.1 + 3192 0.67 0.608079
Target:  5'- cCGcAGccacUCCGAGcGCGGCcgcgcGGCCGCCg -3'
miRNA:   3'- aGCuUC----AGGCUCcCGCCG-----UCGGCGGg -5'
25072 3' -61.8 NC_005336.1 + 3192 0.67 0.608079
Target:  5'- cCGcAGccacUCCGAGcGCGGCcgcgcGGCCGCCg -3'
miRNA:   3'- aGCuUC----AGGCUCcCGCCG-----UCGGCGGg -5'
25072 3' -61.8 NC_005336.1 + 3499 0.67 0.588482
Target:  5'- gCGAAGgcggCCGgcAGcGGCGGC-GCCGCg- -3'
miRNA:   3'- aGCUUCa---GGC--UC-CCGCCGuCGGCGgg -5'
25072 3' -61.8 NC_005336.1 + 3499 0.67 0.588482
Target:  5'- gCGAAGgcggCCGgcAGcGGCGGC-GCCGCg- -3'
miRNA:   3'- aGCUUCa---GGC--UC-CCGCCGuCGGCGgg -5'
25072 3' -61.8 NC_005336.1 + 3721 0.67 0.559322
Target:  5'- -aGAGGcgcCCGGGGcGCGGCGGgCGCg- -3'
miRNA:   3'- agCUUCa--GGCUCC-CGCCGUCgGCGgg -5'
25072 3' -61.8 NC_005336.1 + 3721 0.67 0.559322
Target:  5'- -aGAGGcgcCCGGGGcGCGGCGGgCGCg- -3'
miRNA:   3'- agCUUCa--GGCUCC-CGCCGUCgGCGgg -5'
25072 3' -61.8 NC_005336.1 + 3874 0.66 0.676827
Target:  5'- gUCGcgcgCCGAGGccGCGGCcccgcGCCGCgCCa -3'
miRNA:   3'- -AGCuucaGGCUCC--CGCCGu----CGGCG-GG- -5'
25072 3' -61.8 NC_005336.1 + 3874 0.66 0.676827
Target:  5'- gUCGcgcgCCGAGGccGCGGCcccgcGCCGCgCCa -3'
miRNA:   3'- -AGCuucaGGCUCC--CGCCGu----CGGCG-GG- -5'
25072 3' -61.8 NC_005336.1 + 3958 0.69 0.474879
Target:  5'- gCGcAGcagcgCCGccaGCGGCAGCCGCCCc -3'
miRNA:   3'- aGCuUCa----GGCuccCGCCGUCGGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 5384 0.69 0.456962
Target:  5'- ----cGUCCac-GGCGGCGuGCCGCCCu -3'
miRNA:   3'- agcuuCAGGcucCCGCCGU-CGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.