miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25072 3' -61.8 NC_005336.1 + 35501 0.71 0.357854
Target:  5'- aCGc-GUCCGucGGGCGGguGuCCGCCg -3'
miRNA:   3'- aGCuuCAGGCu-CCCGCCguC-GGCGGg -5'
25072 3' -61.8 NC_005336.1 + 1002 0.73 0.281105
Target:  5'- -aGAGGUCCucuGGCGGuCGGCCGCuCCg -3'
miRNA:   3'- agCUUCAGGcucCCGCC-GUCGGCG-GG- -5'
25072 3' -61.8 NC_005336.1 + 39877 0.73 0.281105
Target:  5'- uUCGuGGUCgccGGGCGGCGuCCGCCCg -3'
miRNA:   3'- -AGCuUCAGgcuCCCGCCGUcGGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 68177 0.73 0.281105
Target:  5'- gCGGAcUuuGAGGcCGGCGGCCGUCCc -3'
miRNA:   3'- aGCUUcAggCUCCcGCCGUCGGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 227 0.72 0.307404
Target:  5'- -gGGAGUCgGGuggucGGGUGGCAguGCCGUCCg -3'
miRNA:   3'- agCUUCAGgCU-----CCCGCCGU--CGGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 11315 0.72 0.321244
Target:  5'- aCGAGGUCCucgucGAGcGuGCGGUAGaaGCCCa -3'
miRNA:   3'- aGCUUCAGG-----CUC-C-CGCCGUCggCGGG- -5'
25072 3' -61.8 NC_005336.1 + 138747 0.72 0.328336
Target:  5'- uUCGcgcacccUCCGGGGGacgGGCcGCCGCCCg -3'
miRNA:   3'- -AGCuuc----AGGCUCCCg--CCGuCGGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 42206 0.71 0.349554
Target:  5'- gCGGAGUUCGcGcGGCGGUacccgcgcaccgcGGCCGCCg -3'
miRNA:   3'- aGCUUCAGGCuC-CCGCCG-------------UCGGCGGg -5'
25072 3' -61.8 NC_005336.1 + 51669 0.71 0.350303
Target:  5'- aUCGAGcuGcCCGAGGGcCGGguGCCGgCg -3'
miRNA:   3'- -AGCUU--CaGGCUCCC-GCCguCGGCgGg -5'
25072 3' -61.8 NC_005336.1 + 63284 0.73 0.281105
Target:  5'- aCGAagAGUCCggcgacgcaGAGGGCGGCGcGagCGCCCg -3'
miRNA:   3'- aGCU--UCAGG---------CUCCCGCCGU-Cg-GCGGG- -5'
25072 3' -61.8 NC_005336.1 + 110383 0.73 0.274816
Target:  5'- aCGAGGUCCauGAGcaucuugauGGUGGCGGCCGCg- -3'
miRNA:   3'- aGCUUCAGG--CUC---------CCGCCGUCGGCGgg -5'
25072 3' -61.8 NC_005336.1 + 67672 0.73 0.268639
Target:  5'- gCGuc-UCCGcGGGCGGCAGCgGCuCCa -3'
miRNA:   3'- aGCuucAGGCuCCCGCCGUCGgCG-GG- -5'
25072 3' -61.8 NC_005336.1 + 84829 0.77 0.158276
Target:  5'- gCGaAAGUuucaaucuucugugUCGAGGGCGGCuGCCGCUCg -3'
miRNA:   3'- aGC-UUCA--------------GGCUCCCGCCGuCGGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 95840 0.76 0.175769
Target:  5'- gCGgcGUCCGuGGGCGGCgccgAGgCGCCUa -3'
miRNA:   3'- aGCuuCAGGCuCCCGCCG----UCgGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 81155 0.76 0.19543
Target:  5'- cUCGuAGUCCGcgucGGacacgagcccguugcGGCGGCAGCCGCCg -3'
miRNA:   3'- -AGCuUCAGGC----UC---------------CCGCCGUCGGCGGg -5'
25072 3' -61.8 NC_005336.1 + 41164 0.75 0.203043
Target:  5'- aUGAccUCCGGcGuGcGCGGCAGCCGCCCg -3'
miRNA:   3'- aGCUucAGGCU-C-C-CGCCGUCGGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 26370 0.75 0.212921
Target:  5'- gCGGAGUCCgcGAGGuccaCGGUgaAGCCGCCCu -3'
miRNA:   3'- aGCUUCAGG--CUCCc---GCCG--UCGGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 109669 0.74 0.233916
Target:  5'- -gGAAGUCgCGcAGcuGGCGGCGGUCGUCCa -3'
miRNA:   3'- agCUUCAG-GC-UC--CCGCCGUCGGCGGG- -5'
25072 3' -61.8 NC_005336.1 + 134406 0.74 0.233916
Target:  5'- aCGGcaucgCgGAGGGCGGCAcGCCGCCg -3'
miRNA:   3'- aGCUuca--GgCUCCCGCCGU-CGGCGGg -5'
25072 3' -61.8 NC_005336.1 + 93372 0.74 0.239429
Target:  5'- aUGAGGUUgGAGGcGCGGC-GCCGCgCg -3'
miRNA:   3'- aGCUUCAGgCUCC-CGCCGuCGGCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.