miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25072 5' -56.3 NC_005336.1 + 89839 0.66 0.895654
Target:  5'- cGGGG--GCUGGuccUGCGCGcaGAugcgcugcgccgaccGCCCCu -3'
miRNA:   3'- aCCCCaaCGACU---ACGCGCa-CU---------------UGGGG- -5'
25072 5' -56.3 NC_005336.1 + 96814 0.66 0.886203
Target:  5'- aGGGcgagauGgaGCUGAaGUGCGUGAACaUCCu -3'
miRNA:   3'- aCCC------CaaCGACUaCGCGCACUUG-GGG- -5'
25072 5' -56.3 NC_005336.1 + 73514 0.66 0.886203
Target:  5'- uUGGGGaacccgcggucgUUGCUGuacCGCuUGAACUCCa -3'
miRNA:   3'- -ACCCC------------AACGACuacGCGcACUUGGGG- -5'
25072 5' -56.3 NC_005336.1 + 30612 0.66 0.886203
Target:  5'- cGGGcGgcccGCgcgugGAccgGCGCGUGuucGACCCCa -3'
miRNA:   3'- aCCC-Caa--CGa----CUa--CGCGCAC---UUGGGG- -5'
25072 5' -56.3 NC_005336.1 + 10384 0.66 0.879893
Target:  5'- cGGGGggGCgggcugucuucgaagGcgGCGCGgagcucGGGCUCCg -3'
miRNA:   3'- aCCCCaaCGa--------------CuaCGCGCa-----CUUGGGG- -5'
25072 5' -56.3 NC_005336.1 + 97357 0.66 0.87918
Target:  5'- cGGGGUcguaGCgcc-GCGCGagGAACUCCa -3'
miRNA:   3'- aCCCCAa---CGacuaCGCGCa-CUUGGGG- -5'
25072 5' -56.3 NC_005336.1 + 88527 0.66 0.871936
Target:  5'- aUGGGGUcGgUGA-GCgGCGUGGACUg- -3'
miRNA:   3'- -ACCCCAaCgACUaCG-CGCACUUGGgg -5'
25072 5' -56.3 NC_005336.1 + 34293 0.66 0.86143
Target:  5'- cUGGGGcgcgcgcagcuacUGC-GGUGCGCGUcgcagccAGCCCCg -3'
miRNA:   3'- -ACCCCa------------ACGaCUACGCGCAc------UUGGGG- -5'
25072 5' -56.3 NC_005336.1 + 93944 0.67 0.848924
Target:  5'- cGGGGUgcugcgacgaGCUGGUGCGgGcGGGCgCgCCg -3'
miRNA:   3'- aCCCCAa---------CGACUACGCgCaCUUG-G-GG- -5'
25072 5' -56.3 NC_005336.1 + 87234 0.67 0.840848
Target:  5'- aGGGGUcgUGCU--UGCGCccgucgaUGAGCaCCCa -3'
miRNA:   3'- aCCCCA--ACGAcuACGCGc------ACUUG-GGG- -5'
25072 5' -56.3 NC_005336.1 + 110910 0.67 0.830064
Target:  5'- cGGcGGUguucgacgugacgcUGCUGGcgaugcacgGCGUgGUGGACCCCu -3'
miRNA:   3'- aCC-CCA--------------ACGACUa--------CGCG-CACUUGGGG- -5'
25072 5' -56.3 NC_005336.1 + 79474 0.67 0.82413
Target:  5'- cGGGGUUGCcGAagGcCGCG-GGACCa- -3'
miRNA:   3'- aCCCCAACGaCUa-C-GCGCaCUUGGgg -5'
25072 5' -56.3 NC_005336.1 + 9118 0.67 0.82413
Target:  5'- cUGcGGGaUGUUGAgcucGCGCGUGGcggucaucugcGCCUCg -3'
miRNA:   3'- -AC-CCCaACGACUa---CGCGCACU-----------UGGGG- -5'
25072 5' -56.3 NC_005336.1 + 43137 0.68 0.806707
Target:  5'- aGGcGUUGCUGcucagccacgGCGCGcuGACCCCg -3'
miRNA:   3'- aCCcCAACGACua--------CGCGCacUUGGGG- -5'
25072 5' -56.3 NC_005336.1 + 108005 0.68 0.797753
Target:  5'- aUGGcGGUgGCc-AUGUaCGUGAGCCCCa -3'
miRNA:   3'- -ACC-CCAaCGacUACGcGCACUUGGGG- -5'
25072 5' -56.3 NC_005336.1 + 72152 0.68 0.788647
Target:  5'- cUGGuGUUGCgcGcgGCGCGcGAGCCgCCg -3'
miRNA:   3'- -ACCcCAACGa-CuaCGCGCaCUUGG-GG- -5'
25072 5' -56.3 NC_005336.1 + 88819 0.68 0.779399
Target:  5'- -cGGGUUGgUGAUGCGCc--GGCCgCCg -3'
miRNA:   3'- acCCCAACgACUACGCGcacUUGG-GG- -5'
25072 5' -56.3 NC_005336.1 + 18988 0.68 0.760513
Target:  5'- cUGGGGU--CUG-UGCGCGUGAcgaGCCg- -3'
miRNA:   3'- -ACCCCAacGACuACGCGCACU---UGGgg -5'
25072 5' -56.3 NC_005336.1 + 123536 0.69 0.750894
Target:  5'- gUGGaGcUGCUGcUGCGCGcgggcgcGGACCCCg -3'
miRNA:   3'- -ACCcCaACGACuACGCGCa------CUUGGGG- -5'
25072 5' -56.3 NC_005336.1 + 35382 0.69 0.731348
Target:  5'- ------gGCUGGUGCGCGUGGugaacuuguCCCCg -3'
miRNA:   3'- accccaaCGACUACGCGCACUu--------GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.