miRNA display CGI


Results 1 - 20 of 373 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25074 3' -55.6 NC_005336.1 + 82242 0.66 0.914123
Target:  5'- cGCG-GCGCca-GGCA---GCACCAGCa -3'
miRNA:   3'- -CGCuCGCGcacUCGUuucCGUGGUCG- -5'
25074 3' -55.6 NC_005336.1 + 34058 0.66 0.914123
Target:  5'- cCGAGCGCGUGGau-AAGcUACUAGCc -3'
miRNA:   3'- cGCUCGCGCACUcguUUCcGUGGUCG- -5'
25074 3' -55.6 NC_005336.1 + 97129 0.66 0.914123
Target:  5'- cGCGcAGCGCGcgGGGCAGca-CGCCGGa -3'
miRNA:   3'- -CGC-UCGCGCa-CUCGUUuccGUGGUCg -5'
25074 3' -55.6 NC_005336.1 + 68279 0.66 0.914123
Target:  5'- gGCGcGCGCGaUGAGCcgcugcGGGCguGCguGCu -3'
miRNA:   3'- -CGCuCGCGC-ACUCGuu----UCCG--UGguCG- -5'
25074 3' -55.6 NC_005336.1 + 115228 0.66 0.914123
Target:  5'- uGCGugcGCGCGUGcGCGAA-GUugCAGg -3'
miRNA:   3'- -CGCu--CGCGCACuCGUUUcCGugGUCg -5'
25074 3' -55.6 NC_005336.1 + 54285 0.66 0.914123
Target:  5'- uCGAGgucucgaGCGUGAGCGucgauGGCgACCGcGCg -3'
miRNA:   3'- cGCUCg------CGCACUCGUuu---CCG-UGGU-CG- -5'
25074 3' -55.6 NC_005336.1 + 5926 0.66 0.914123
Target:  5'- uCGGGgGCGUccGCGgcGGCAuuuauCCAGCg -3'
miRNA:   3'- cGCUCgCGCAcuCGUuuCCGU-----GGUCG- -5'
25074 3' -55.6 NC_005336.1 + 132273 0.66 0.914123
Target:  5'- -gGAGCGCGUGcucGCAAccGUGCCacuGGCc -3'
miRNA:   3'- cgCUCGCGCACu--CGUUucCGUGG---UCG- -5'
25074 3' -55.6 NC_005336.1 + 78757 0.66 0.914123
Target:  5'- gGCuGGuCGCG-GAGCu---GCACCGGCu -3'
miRNA:   3'- -CGcUC-GCGCaCUCGuuucCGUGGUCG- -5'
25074 3' -55.6 NC_005336.1 + 12734 0.66 0.914123
Target:  5'- aGCGGGUugccGCGcaUGAGCAuguGCAgCGGCg -3'
miRNA:   3'- -CGCUCG----CGC--ACUCGUuucCGUgGUCG- -5'
25074 3' -55.6 NC_005336.1 + 14660 0.66 0.914123
Target:  5'- cGCGAGCaccaCGUGuccgggcacGGCGuacauGGGCGgCGGCa -3'
miRNA:   3'- -CGCUCGc---GCAC---------UCGUu----UCCGUgGUCG- -5'
25074 3' -55.6 NC_005336.1 + 58572 0.66 0.914123
Target:  5'- cGCGAgauccuGCGCGUGcuggGGCuGGGGCAgCCAu- -3'
miRNA:   3'- -CGCU------CGCGCAC----UCGuUUCCGU-GGUcg -5'
25074 3' -55.6 NC_005336.1 + 88433 0.66 0.914123
Target:  5'- cGCGgccucGGCGCc--GGCgGAGGGCACgGGCa -3'
miRNA:   3'- -CGC-----UCGCGcacUCG-UUUCCGUGgUCG- -5'
25074 3' -55.6 NC_005336.1 + 125245 0.66 0.914123
Target:  5'- cGCGAugguGCGCGUGAuCGugccGGGCGCgGaGCu -3'
miRNA:   3'- -CGCU----CGCGCACUcGUu---UCCGUGgU-CG- -5'
25074 3' -55.6 NC_005336.1 + 111046 0.66 0.91173
Target:  5'- uGCuGGCGCGcccguugacggggaUGugcuuguaggucuGGCAGAGcaGCACCAGCg -3'
miRNA:   3'- -CGcUCGCGC--------------AC-------------UCGUUUC--CGUGGUCG- -5'
25074 3' -55.6 NC_005336.1 + 125481 0.66 0.908069
Target:  5'- uGCGAuggguGCGCGUGcguGCGGuccGCAgCGGCa -3'
miRNA:   3'- -CGCU-----CGCGCACu--CGUUuc-CGUgGUCG- -5'
25074 3' -55.6 NC_005336.1 + 76906 0.66 0.908069
Target:  5'- cGCucGGCGCGgcguuuggagGAGCGGuugcGGCAgCGGCg -3'
miRNA:   3'- -CGc-UCGCGCa---------CUCGUUu---CCGUgGUCG- -5'
25074 3' -55.6 NC_005336.1 + 136464 0.66 0.908069
Target:  5'- cGCGAGCuucuccuccGCGc--GCAAGGGCGCgCuGCu -3'
miRNA:   3'- -CGCUCG---------CGCacuCGUUUCCGUG-GuCG- -5'
25074 3' -55.6 NC_005336.1 + 109403 0.66 0.908069
Target:  5'- cGCG-GCGCGcagccGcGCGAAGGcCGCCuugAGCg -3'
miRNA:   3'- -CGCuCGCGCa----CuCGUUUCC-GUGG---UCG- -5'
25074 3' -55.6 NC_005336.1 + 28264 0.66 0.908069
Target:  5'- uGCGguGGCGCGgcacuGCGucGGGCACUcGCa -3'
miRNA:   3'- -CGC--UCGCGCacu--CGUu-UCCGUGGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.