miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25074 5' -56.7 NC_005336.1 + 109091 0.66 0.8744
Target:  5'- aGGCGcUGGaccaGaCUCUgggCCACGGGCUCGc -3'
miRNA:   3'- gCUGC-ACCg---C-GGGAa--GGUGUUCGAGU- -5'
25074 5' -56.7 NC_005336.1 + 109598 0.66 0.8744
Target:  5'- uGAUGcccgcGGUGUgCUUCCACAGGCg-- -3'
miRNA:   3'- gCUGCa----CCGCGgGAAGGUGUUCGagu -5'
25074 5' -56.7 NC_005336.1 + 45837 0.66 0.8744
Target:  5'- -cGCGUccgGcGCGCCCgcCCGCAccAGCUCGu -3'
miRNA:   3'- gcUGCA---C-CGCGGGaaGGUGU--UCGAGU- -5'
25074 5' -56.7 NC_005336.1 + 93284 0.66 0.8744
Target:  5'- -aACGUGGCGCUCUUCgugguaAAGCUg- -3'
miRNA:   3'- gcUGCACCGCGGGAAGgug---UUCGAgu -5'
25074 5' -56.7 NC_005336.1 + 58855 0.66 0.8744
Target:  5'- gGACGUGGaCGCCaa-CUACGucuccAGCUCc -3'
miRNA:   3'- gCUGCACC-GCGGgaaGGUGU-----UCGAGu -5'
25074 5' -56.7 NC_005336.1 + 39698 0.66 0.867021
Target:  5'- gCGGCG-GGCGCCUcgCCGCcgcGCUgGa -3'
miRNA:   3'- -GCUGCaCCGCGGGaaGGUGuu-CGAgU- -5'
25074 5' -56.7 NC_005336.1 + 41506 0.66 0.862492
Target:  5'- aCGGCGUccgcaggccuguugcGGCgGCUCUUgcaCCAgAAGCUCAu -3'
miRNA:   3'- -GCUGCA---------------CCG-CGGGAA---GGUgUUCGAGU- -5'
25074 5' -56.7 NC_005336.1 + 4043 0.66 0.860199
Target:  5'- cCGGCGaggGGCGCCgCgcgcggaccaagugcUCCACGAGCa-- -3'
miRNA:   3'- -GCUGCa--CCGCGG-Ga--------------AGGUGUUCGagu -5'
25074 5' -56.7 NC_005336.1 + 96272 0.66 0.85943
Target:  5'- cCGACuUGGCGCCCgcguacaCCggGCAGGCg-- -3'
miRNA:   3'- -GCUGcACCGCGGGaa-----GG--UGUUCGagu -5'
25074 5' -56.7 NC_005336.1 + 99205 0.66 0.85943
Target:  5'- aCGACG-GcGCGCCCg--CGC-GGCUCAu -3'
miRNA:   3'- -GCUGCaC-CGCGGGaagGUGuUCGAGU- -5'
25074 5' -56.7 NC_005336.1 + 128941 0.66 0.85943
Target:  5'- gGAC-UGGCGCUCggagUUCUGCAAGC-CAa -3'
miRNA:   3'- gCUGcACCGCGGG----AAGGUGUUCGaGU- -5'
25074 5' -56.7 NC_005336.1 + 111870 0.66 0.85943
Target:  5'- aGACGagcgGGCGCaCCUU-CGCGGGgUCGa -3'
miRNA:   3'- gCUGCa---CCGCG-GGAAgGUGUUCgAGU- -5'
25074 5' -56.7 NC_005336.1 + 65777 0.66 0.85943
Target:  5'- aGACGgacGGCGUC--UCCGCGAGCg-- -3'
miRNA:   3'- gCUGCa--CCGCGGgaAGGUGUUCGagu -5'
25074 5' -56.7 NC_005336.1 + 73186 0.66 0.85943
Target:  5'- uCGACGUGaagaaGCUCUUCUACcucAAGUUCAa -3'
miRNA:   3'- -GCUGCACcg---CGGGAAGGUG---UUCGAGU- -5'
25074 5' -56.7 NC_005336.1 + 96618 0.66 0.851633
Target:  5'- aCGGCGgggaaGCGCUCgucgCCGcCAGGCUCGu -3'
miRNA:   3'- -GCUGCac---CGCGGGaa--GGU-GUUCGAGU- -5'
25074 5' -56.7 NC_005336.1 + 30358 0.66 0.851633
Target:  5'- uCGcCGUGGaGCCCgcacggcaGCAGGCUCAg -3'
miRNA:   3'- -GCuGCACCgCGGGaagg----UGUUCGAGU- -5'
25074 5' -56.7 NC_005336.1 + 72308 0.66 0.851633
Target:  5'- aCGGCGUGcGCGUga-UCCGCGAgguGCUCAa -3'
miRNA:   3'- -GCUGCAC-CGCGggaAGGUGUU---CGAGU- -5'
25074 5' -56.7 NC_005336.1 + 131348 0.66 0.849254
Target:  5'- uCGACGUuccaccgGGCGCCCgcacgaaucugCCGCAgcgAGUUCu -3'
miRNA:   3'- -GCUGCA-------CCGCGGGaa---------GGUGU---UCGAGu -5'
25074 5' -56.7 NC_005336.1 + 124151 0.66 0.843635
Target:  5'- gGuACGUGGUGCUCUgcggCgGCAcGCUCu -3'
miRNA:   3'- gC-UGCACCGCGGGAa---GgUGUuCGAGu -5'
25074 5' -56.7 NC_005336.1 + 98302 0.66 0.843635
Target:  5'- aGGCcugcGGaCGCCg-UCCGCGAGCUCGc -3'
miRNA:   3'- gCUGca--CC-GCGGgaAGGUGUUCGAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.