miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25074 5' -56.7 NC_005336.1 + 134130 0.68 0.773351
Target:  5'- aGACGcUGGCGgcgcuCCCggCCGCGgacaGGCUCGc -3'
miRNA:   3'- gCUGC-ACCGC-----GGGaaGGUGU----UCGAGU- -5'
25074 5' -56.7 NC_005336.1 + 7135 0.69 0.684858
Target:  5'- gCGGCGUG-CGCCCguacucgCCGCGgaAGUUCAc -3'
miRNA:   3'- -GCUGCACcGCGGGaa-----GGUGU--UCGAGU- -5'
25074 5' -56.7 NC_005336.1 + 71187 0.69 0.694987
Target:  5'- uGGCGcUGGUGCgCUUCCGCAcGCa-- -3'
miRNA:   3'- gCUGC-ACCGCGgGAAGGUGUuCGagu -5'
25074 5' -56.7 NC_005336.1 + 61226 0.69 0.709079
Target:  5'- uCGACGcUGGCGUCCUuggucuucuucgcgcUCCGCGAGgC-CAu -3'
miRNA:   3'- -GCUGC-ACCGCGGGA---------------AGGUGUUC-GaGU- -5'
25074 5' -56.7 NC_005336.1 + 55864 0.68 0.744661
Target:  5'- gCGugGUGGCGCCgaacgUCgACAGGacCUCGu -3'
miRNA:   3'- -GCugCACCGCGGga---AGgUGUUC--GAGU- -5'
25074 5' -56.7 NC_005336.1 + 72152 0.68 0.763902
Target:  5'- aGACGcGcGUGCCCUUCCugcuGCUCu -3'
miRNA:   3'- gCUGCaC-CGCGGGAAGGuguuCGAGu -5'
25074 5' -56.7 NC_005336.1 + 14202 0.68 0.763902
Target:  5'- -cACGUucuGGUGCCgCaccaugUCCACGAGCUCGu -3'
miRNA:   3'- gcUGCA---CCGCGG-Ga-----AGGUGUUCGAGU- -5'
25074 5' -56.7 NC_005336.1 + 53512 0.68 0.763902
Target:  5'- uCGACGUGGuCGCCUcggacaugUUCCcCAcGUUCAa -3'
miRNA:   3'- -GCUGCACC-GCGGG--------AAGGuGUuCGAGU- -5'
25074 5' -56.7 NC_005336.1 + 64725 0.68 0.772412
Target:  5'- aGACGUGGCGUcgcgguaCCUcUCUgcgcacacgcGCGAGCUCu -3'
miRNA:   3'- gCUGCACCGCG-------GGA-AGG----------UGUUCGAGu -5'
25074 5' -56.7 NC_005336.1 + 95508 0.7 0.664475
Target:  5'- cCGAgCGUGGUGCCUgcgaCGCAAGCgCAc -3'
miRNA:   3'- -GCU-GCACCGCGGGaag-GUGUUCGaGU- -5'
25074 5' -56.7 NC_005336.1 + 76813 0.7 0.65424
Target:  5'- gCGACGggucGGCGCuCCUUUUACGGGgUCu -3'
miRNA:   3'- -GCUGCa---CCGCG-GGAAGGUGUUCgAGu -5'
25074 5' -56.7 NC_005336.1 + 119396 0.7 0.65424
Target:  5'- gGGCGUGGgcgaGCUCUUCCAgGcGCUCc -3'
miRNA:   3'- gCUGCACCg---CGGGAAGGUgUuCGAGu -5'
25074 5' -56.7 NC_005336.1 + 66125 0.75 0.368616
Target:  5'- gGGCGUGGUGCUCUUCUACGcGCg-- -3'
miRNA:   3'- gCUGCACCGCGGGAAGGUGUuCGagu -5'
25074 5' -56.7 NC_005336.1 + 98799 0.73 0.455469
Target:  5'- uCGACGcGGCGCCCU-CCugGcgcAGCUUg -3'
miRNA:   3'- -GCUGCaCCGCGGGAaGGugU---UCGAGu -5'
25074 5' -56.7 NC_005336.1 + 3313 0.72 0.522375
Target:  5'- gCGACGUGcagcagcagcGCGCCCUUgCGCGcggaggagaAGCUCGc -3'
miRNA:   3'- -GCUGCAC----------CGCGGGAAgGUGU---------UCGAGU- -5'
25074 5' -56.7 NC_005336.1 + 104188 0.72 0.532257
Target:  5'- aCGGCGUGGUGCgccugaacgCCUUCCuCGAGCa-- -3'
miRNA:   3'- -GCUGCACCGCG---------GGAAGGuGUUCGagu -5'
25074 5' -56.7 NC_005336.1 + 77188 0.71 0.58255
Target:  5'- gCGugGUaGGCGCCCagcagCCGCGGGUcCAg -3'
miRNA:   3'- -GCugCA-CCGCGGGaa---GGUGUUCGaGU- -5'
25074 5' -56.7 NC_005336.1 + 93979 0.71 0.601939
Target:  5'- gGAgGUGGCGCC--UCCACGAaugaccuGCUCGu -3'
miRNA:   3'- gCUgCACCGCGGgaAGGUGUU-------CGAGU- -5'
25074 5' -56.7 NC_005336.1 + 38384 0.7 0.623461
Target:  5'- gCGGCGccgcUGGCGCCCgugCCGCuGGCg-- -3'
miRNA:   3'- -GCUGC----ACCGCGGGaa-GGUGuUCGagu -5'
25074 5' -56.7 NC_005336.1 + 66250 0.7 0.643987
Target:  5'- uCGGCGagGGCuccaCCUUCCugGAGUUCAa -3'
miRNA:   3'- -GCUGCa-CCGcg--GGAAGGugUUCGAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.