miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25075 5' -56.8 NC_005336.1 + 118820 0.66 0.882775
Target:  5'- gCGGCGGAG-GCUGCGCGcaucGCgAgauGGGc -3'
miRNA:   3'- -GCCGUUUCuCGACGUGC----CGgUag-CCC- -5'
25075 5' -56.8 NC_005336.1 + 135999 0.66 0.882775
Target:  5'- gGGCAGcggcuggccgcGGcGCUG-GCGGCCG-CGGGc -3'
miRNA:   3'- gCCGUU-----------UCuCGACgUGCCGGUaGCCC- -5'
25075 5' -56.8 NC_005336.1 + 118565 0.66 0.882775
Target:  5'- aGGUAGuGGAGCgcgaGCACGuGCCcgaGGGa -3'
miRNA:   3'- gCCGUU-UCUCGa---CGUGC-CGGuagCCC- -5'
25075 5' -56.8 NC_005336.1 + 133706 0.66 0.882775
Target:  5'- gCGGCGAGG-GC-GCGCGccuGCUggCGGGc -3'
miRNA:   3'- -GCCGUUUCuCGaCGUGC---CGGuaGCCC- -5'
25075 5' -56.8 NC_005336.1 + 135999 0.66 0.882775
Target:  5'- gGGCAGcggcuggccgcGGcGCUG-GCGGCCG-CGGGc -3'
miRNA:   3'- gCCGUU-----------UCuCGACgUGCCGGUaGCCC- -5'
25075 5' -56.8 NC_005336.1 + 76459 0.66 0.880672
Target:  5'- gGGUcgucguaguugaugAAGGuGCacccggGCACGGCC-UCGGGc -3'
miRNA:   3'- gCCG--------------UUUCuCGa-----CGUGCCGGuAGCCC- -5'
25075 5' -56.8 NC_005336.1 + 109662 0.66 0.875688
Target:  5'- aCGGCGAGGAagucgcgcaGCUG-GCGGCgGUCGu- -3'
miRNA:   3'- -GCCGUUUCU---------CGACgUGCCGgUAGCcc -5'
25075 5' -56.8 NC_005336.1 + 7003 0.66 0.875688
Target:  5'- gGGCGAAaAGC-GCGCGugcGCCAUCuGGa -3'
miRNA:   3'- gCCGUUUcUCGaCGUGC---CGGUAGcCC- -5'
25075 5' -56.8 NC_005336.1 + 5824 0.66 0.875688
Target:  5'- cCGGCGccGcGC-GCGCGGCCAgcCGGc -3'
miRNA:   3'- -GCCGUuuCuCGaCGUGCCGGUa-GCCc -5'
25075 5' -56.8 NC_005336.1 + 51666 0.66 0.875688
Target:  5'- gGGUAccugGGGAGcCUGCugGGCCugcaGGa -3'
miRNA:   3'- gCCGU----UUCUC-GACGugCCGGuag-CCc -5'
25075 5' -56.8 NC_005336.1 + 30362 0.66 0.87352
Target:  5'- gCGGacacCGAGGAGCUGCugcgcacgcucaagGCGGCCuucgCGcGGc -3'
miRNA:   3'- -GCC----GUUUCUCGACG--------------UGCCGGua--GC-CC- -5'
25075 5' -56.8 NC_005336.1 + 122739 0.66 0.868385
Target:  5'- cCGGCGuccuGAG-GCUGCgcucgccggccuGCGGCUGUucgCGGGa -3'
miRNA:   3'- -GCCGU----UUCuCGACG------------UGCCGGUA---GCCC- -5'
25075 5' -56.8 NC_005336.1 + 136297 0.66 0.868385
Target:  5'- gCGGCGccGccGCUGC-CGGCCGccuUCGcGGa -3'
miRNA:   3'- -GCCGUuuCu-CGACGuGCCGGU---AGC-CC- -5'
25075 5' -56.8 NC_005336.1 + 136297 0.66 0.868385
Target:  5'- gCGGCGccGccGCUGC-CGGCCGccuUCGcGGa -3'
miRNA:   3'- -GCCGUuuCu-CGACGuGCCGGU---AGC-CC- -5'
25075 5' -56.8 NC_005336.1 + 123471 0.66 0.865404
Target:  5'- gCGGCGAGGcgcgcaagacgccGCUGCACGuGCacugcgCGGGc -3'
miRNA:   3'- -GCCGUUUCu------------CGACGUGC-CGgua---GCCC- -5'
25075 5' -56.8 NC_005336.1 + 36572 0.66 0.863901
Target:  5'- aGGCGAgcacggAGAGCUGCgAgaugagcccgaccugCGGCCcgcgcUCGGGc -3'
miRNA:   3'- gCCGUU------UCUCGACG-U---------------GCCGGu----AGCCC- -5'
25075 5' -56.8 NC_005336.1 + 61172 0.66 0.86087
Target:  5'- aGGa--AGuGgUGCACGGCCGUCGcGa -3'
miRNA:   3'- gCCguuUCuCgACGUGCCGGUAGC-Cc -5'
25075 5' -56.8 NC_005336.1 + 6588 0.66 0.86087
Target:  5'- aGGUucacguuGcuCUGCACGGCCGagGGGu -3'
miRNA:   3'- gCCGuuu----CucGACGUGCCGGUagCCC- -5'
25075 5' -56.8 NC_005336.1 + 94626 0.66 0.86087
Target:  5'- aGGCGAAGAcGCaG-GCGGCCGUCa-- -3'
miRNA:   3'- gCCGUUUCU-CGaCgUGCCGGUAGccc -5'
25075 5' -56.8 NC_005336.1 + 109380 0.66 0.86087
Target:  5'- uCGGCGcGGAGCUcGCGCaGCuCcgCGGc -3'
miRNA:   3'- -GCCGUuUCUCGA-CGUGcCG-GuaGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.