miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25076 5' -52.3 NC_005336.1 + 83682 0.66 0.986967
Target:  5'- uCCGCGACgu---CCUGCaGGUACCg-- -3'
miRNA:   3'- -GGUGUUGaagcuGGACG-CCAUGGacc -5'
25076 5' -52.3 NC_005336.1 + 123397 0.66 0.986967
Target:  5'- aCACAGCgUgGACg-GCGGcgcgcGCCUGGa -3'
miRNA:   3'- gGUGUUGaAgCUGgaCGCCa----UGGACC- -5'
25076 5' -52.3 NC_005336.1 + 87196 0.66 0.986967
Target:  5'- gCACGAUcaCgGGCUUGCGGUuCUUGGu -3'
miRNA:   3'- gGUGUUGaaG-CUGGACGCCAuGGACC- -5'
25076 5' -52.3 NC_005336.1 + 136594 0.66 0.986481
Target:  5'- gCCACGGCggccgcgCGGCCgcgcucggaguggcUGCGGcAgCUGGa -3'
miRNA:   3'- -GGUGUUGaa-----GCUGG--------------ACGCCaUgGACC- -5'
25076 5' -52.3 NC_005336.1 + 136594 0.66 0.986481
Target:  5'- gCCACGGCggccgcgCGGCCgcgcucggaguggcUGCGGcAgCUGGa -3'
miRNA:   3'- -GGUGUUGaa-----GCUGG--------------ACGCCaUgGACC- -5'
25076 5' -52.3 NC_005336.1 + 59357 0.66 0.985117
Target:  5'- gCCGCGGgcgUCGGCCUGCGcgccgccggcagcGUGCCg-- -3'
miRNA:   3'- -GGUGUUga-AGCUGGACGC-------------CAUGGacc -5'
25076 5' -52.3 NC_005336.1 + 28626 0.66 0.98346
Target:  5'- aCgGCGAUgagCG-CUUGUGcGUGCCUGGu -3'
miRNA:   3'- -GgUGUUGaa-GCuGGACGC-CAUGGACC- -5'
25076 5' -52.3 NC_005336.1 + 80664 0.66 0.98346
Target:  5'- gCCGCGGCgcaCGGCUUGCGGcaggaagguCgUGGg -3'
miRNA:   3'- -GGUGUUGaa-GCUGGACGCCau-------GgACC- -5'
25076 5' -52.3 NC_005336.1 + 53215 0.66 0.979281
Target:  5'- gCCACAACa-----C-GCGGUACCUGGc -3'
miRNA:   3'- -GGUGUUGaagcugGaCGCCAUGGACC- -5'
25076 5' -52.3 NC_005336.1 + 119528 0.66 0.979281
Target:  5'- cCCGCAGCccCaGCCUGCGcc-CCUGGc -3'
miRNA:   3'- -GGUGUUGaaGcUGGACGCcauGGACC- -5'
25076 5' -52.3 NC_005336.1 + 124645 0.67 0.976919
Target:  5'- gCCugAACccgcCGACC-GCGGcUGCgCUGGa -3'
miRNA:   3'- -GGugUUGaa--GCUGGaCGCC-AUG-GACC- -5'
25076 5' -52.3 NC_005336.1 + 108804 0.67 0.974365
Target:  5'- gCGCGGCaUCGuguACCgGCuGGUgACCUGGg -3'
miRNA:   3'- gGUGUUGaAGC---UGGaCG-CCA-UGGACC- -5'
25076 5' -52.3 NC_005336.1 + 98480 0.67 0.974365
Target:  5'- uCUACAACggCGGCCgcuuUGCGG-ACCUc- -3'
miRNA:   3'- -GGUGUUGaaGCUGG----ACGCCaUGGAcc -5'
25076 5' -52.3 NC_005336.1 + 53707 0.67 0.971612
Target:  5'- gCCugGACUUCGACa--CGG-ACgUGGa -3'
miRNA:   3'- -GGugUUGAAGCUGgacGCCaUGgACC- -5'
25076 5' -52.3 NC_005336.1 + 59980 0.67 0.971612
Target:  5'- -aACAACUUCGugCUgagcGUGG-ACCUGc -3'
miRNA:   3'- ggUGUUGAAGCugGA----CGCCaUGGACc -5'
25076 5' -52.3 NC_005336.1 + 34898 0.67 0.971612
Target:  5'- gCCGCGGCggcggcccucgUUGGCCUGCcGGauaGCUUGGu -3'
miRNA:   3'- -GGUGUUGa----------AGCUGGACG-CCa--UGGACC- -5'
25076 5' -52.3 NC_005336.1 + 62326 0.67 0.971612
Target:  5'- uCCGCGGCgucgUCGAag-GCGGUGCgcagaucgCUGGu -3'
miRNA:   3'- -GGUGUUGa---AGCUggaCGCCAUG--------GACC- -5'
25076 5' -52.3 NC_005336.1 + 9818 0.67 0.968652
Target:  5'- uCCACGAaggCGAC--GCGGUugccgaGCCUGGa -3'
miRNA:   3'- -GGUGUUgaaGCUGgaCGCCA------UGGACC- -5'
25076 5' -52.3 NC_005336.1 + 100174 0.67 0.968652
Target:  5'- gCGCAGCcaUGAUCgugGCGGccuucgACCUGGg -3'
miRNA:   3'- gGUGUUGaaGCUGGa--CGCCa-----UGGACC- -5'
25076 5' -52.3 NC_005336.1 + 101718 0.67 0.965479
Target:  5'- gCGCGGCUcgCGGCC-GCGG-ACgUGGc -3'
miRNA:   3'- gGUGUUGAa-GCUGGaCGCCaUGgACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.