miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25078 3' -62 NC_005336.1 + 59494 0.66 0.671677
Target:  5'- aGCGGCGU-GGUGAGGAaguagauggcGCCGGgccagaagCGCGc -3'
miRNA:   3'- -UGCUGCGcCCGCUCCU----------CGGCCa-------GUGC- -5'
25078 3' -62 NC_005336.1 + 88440 0.66 0.671677
Target:  5'- uCGGCGCcGGCGGaGGGCaCGGgCACGu -3'
miRNA:   3'- uGCUGCGcCCGCUcCUCG-GCCaGUGC- -5'
25078 3' -62 NC_005336.1 + 68372 0.66 0.661936
Target:  5'- gACG-CGCGGGCGccGGcGGCCGcGcuguUCGCGg -3'
miRNA:   3'- -UGCuGCGCCCGCu-CC-UCGGC-C----AGUGC- -5'
25078 3' -62 NC_005336.1 + 133490 0.66 0.661936
Target:  5'- --uGCGCauGGGCGcGGAGCuCGGgCACGu -3'
miRNA:   3'- ugcUGCG--CCCGCuCCUCG-GCCaGUGC- -5'
25078 3' -62 NC_005336.1 + 20075 0.66 0.652172
Target:  5'- gGCGAcCGCGGGCucGGcggcucGCCGGcCugGc -3'
miRNA:   3'- -UGCU-GCGCCCGcuCCu-----CGGCCaGugC- -5'
25078 3' -62 NC_005336.1 + 35982 0.66 0.651195
Target:  5'- gAUGGCGCGcGGCGcGGAGUugUGGUugaugccCACGa -3'
miRNA:   3'- -UGCUGCGC-CCGCuCCUCG--GCCA-------GUGC- -5'
25078 3' -62 NC_005336.1 + 7351 0.66 0.642394
Target:  5'- cGCGGCagccGCGGGCgugcGAGGucgcccGCCGG-CGCGc -3'
miRNA:   3'- -UGCUG----CGCCCG----CUCCu-----CGGCCaGUGC- -5'
25078 3' -62 NC_005336.1 + 114501 0.66 0.642394
Target:  5'- cGCGuucuCGCGGcGCGuGGGGCgCuGUCugGa -3'
miRNA:   3'- -UGCu---GCGCC-CGCuCCUCG-GcCAGugC- -5'
25078 3' -62 NC_005336.1 + 74251 0.66 0.622823
Target:  5'- --aGCGUGGGCGAGG-GCCGcacUUugGg -3'
miRNA:   3'- ugcUGCGCCCGCUCCuCGGCc--AGugC- -5'
25078 3' -62 NC_005336.1 + 100229 0.66 0.622823
Target:  5'- uGCGGCGCagcaGcGCGAGGucGCUGGgcugCACGa -3'
miRNA:   3'- -UGCUGCGc---C-CGCUCCu-CGGCCa---GUGC- -5'
25078 3' -62 NC_005336.1 + 119113 0.66 0.621845
Target:  5'- gGCcGCGCGGGUgccuuacgacaucGAGGAgguGCCGGacCACGa -3'
miRNA:   3'- -UGcUGCGCCCG-------------CUCCU---CGGCCa-GUGC- -5'
25078 3' -62 NC_005336.1 + 83481 0.66 0.61891
Target:  5'- cGCGcACGCGGGCGAuuccauuuauaccgGGAguuuuuaugagguGCCGGUauuguccaCGCGa -3'
miRNA:   3'- -UGC-UGCGCCCGCU--------------CCU-------------CGGCCA--------GUGC- -5'
25078 3' -62 NC_005336.1 + 50963 0.67 0.613044
Target:  5'- aGCGGCGUGcgccGGCGcGGcGGCCGG-CGCa -3'
miRNA:   3'- -UGCUGCGC----CCGCuCC-UCGGCCaGUGc -5'
25078 3' -62 NC_005336.1 + 5996 0.67 0.613044
Target:  5'- gAUGGgGUGcGGCGAGGAcacgcgcaGCCGGaaGCGg -3'
miRNA:   3'- -UGCUgCGC-CCGCUCCU--------CGGCCagUGC- -5'
25078 3' -62 NC_005336.1 + 91037 0.67 0.61109
Target:  5'- gACG-CGCGGGUaaaagcacacgcgGAGGGgcuccuuGCCGGcCGCGa -3'
miRNA:   3'- -UGCuGCGCCCG-------------CUCCU-------CGGCCaGUGC- -5'
25078 3' -62 NC_005336.1 + 117912 0.67 0.603278
Target:  5'- cGCGcucguagaGCGUGcGCGcGG-GCCGGUCGCGg -3'
miRNA:   3'- -UGC--------UGCGCcCGCuCCuCGGCCAGUGC- -5'
25078 3' -62 NC_005336.1 + 86384 0.67 0.603278
Target:  5'- -aGugGCGGcucacgGCGuuGGGCaCGGUCGCGu -3'
miRNA:   3'- ugCugCGCC------CGCucCUCG-GCCAGUGC- -5'
25078 3' -62 NC_005336.1 + 86270 0.67 0.603278
Target:  5'- cCGGCGCGcGCGcGGAGuCCGGcucCACGc -3'
miRNA:   3'- uGCUGCGCcCGCuCCUC-GGCCa--GUGC- -5'
25078 3' -62 NC_005336.1 + 30816 0.67 0.603278
Target:  5'- cGCGaccGCGCGGGCGcgcaccAGcGGCUGGUUGCa -3'
miRNA:   3'- -UGC---UGCGCCCGC------UCcUCGGCCAGUGc -5'
25078 3' -62 NC_005336.1 + 40005 0.67 0.583811
Target:  5'- cGCGACGCGcuaccaCGAGGcAGUacgaGGUCACGu -3'
miRNA:   3'- -UGCUGCGCcc----GCUCC-UCGg---CCAGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.