miRNA display CGI


Results 1 - 20 of 442 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25081 3' -61 NC_005336.1 + 35353 0.66 0.7077
Target:  5'- ---gGGCGCGCCGcGGCgCGCGAUGgUg -3'
miRNA:   3'- cccgCCGUGCGGUuCUG-GCGCUGCgA- -5'
25081 3' -61 NC_005336.1 + 103610 0.66 0.7077
Target:  5'- cGGCGGCGauggUGCCcggcGAGGCgCGCGAggaCGCc -3'
miRNA:   3'- cCCGCCGU----GCGG----UUCUG-GCGCU---GCGa -5'
25081 3' -61 NC_005336.1 + 74935 0.66 0.7077
Target:  5'- cGGuuGCGGCacACGCgCAGcGCCGCG-CGCg -3'
miRNA:   3'- -CC--CGCCG--UGCG-GUUcUGGCGCuGCGa -5'
25081 3' -61 NC_005336.1 + 28944 0.66 0.7077
Target:  5'- aGGGCGuCGCGCCcgucagggAAGcGCUGCGcaGCGCa -3'
miRNA:   3'- -CCCGCcGUGCGG--------UUC-UGGCGC--UGCGa -5'
25081 3' -61 NC_005336.1 + 93523 0.66 0.7077
Target:  5'- cGGCaGCuCGCCGcAGcGCCGCG-CGCa -3'
miRNA:   3'- cCCGcCGuGCGGU-UC-UGGCGCuGCGa -5'
25081 3' -61 NC_005336.1 + 9687 0.66 0.7077
Target:  5'- cGGCGGCG-GCCuccucGGCgGCGGcCGCg -3'
miRNA:   3'- cCCGCCGUgCGGuu---CUGgCGCU-GCGa -5'
25081 3' -61 NC_005336.1 + 118433 0.66 0.7077
Target:  5'- -uGCGGCGCGUCgAAGGCUGCcuugagcacGGCGUc -3'
miRNA:   3'- ccCGCCGUGCGG-UUCUGGCG---------CUGCGa -5'
25081 3' -61 NC_005336.1 + 67643 0.66 0.7077
Target:  5'- cGGCGGCuCGCgc--GCCGCG-CGCa -3'
miRNA:   3'- cCCGCCGuGCGguucUGGCGCuGCGa -5'
25081 3' -61 NC_005336.1 + 111006 0.66 0.7077
Target:  5'- cGGGC-GCGCGgCAcauGGACgCGCaGCGCg -3'
miRNA:   3'- -CCCGcCGUGCgGU---UCUG-GCGcUGCGa -5'
25081 3' -61 NC_005336.1 + 136021 0.66 0.7077
Target:  5'- uGGCGGC-CGC--GGGCCGCGcgGCGg- -3'
miRNA:   3'- cCCGCCGuGCGguUCUGGCGC--UGCga -5'
25081 3' -61 NC_005336.1 + 136021 0.66 0.7077
Target:  5'- uGGCGGC-CGC--GGGCCGCGcgGCGg- -3'
miRNA:   3'- cCCGCCGuGCGguUCUGGCGC--UGCga -5'
25081 3' -61 NC_005336.1 + 78233 0.66 0.7077
Target:  5'- aGGCcaGGCugGgCAGGugCcCGACGCc -3'
miRNA:   3'- cCCG--CCGugCgGUUCugGcGCUGCGa -5'
25081 3' -61 NC_005336.1 + 90262 0.66 0.7077
Target:  5'- gGGGCcgccgcugcaccGGCGCGCgGAGcCCG-GcACGCUg -3'
miRNA:   3'- -CCCG------------CCGUGCGgUUCuGGCgC-UGCGA- -5'
25081 3' -61 NC_005336.1 + 95743 0.66 0.706731
Target:  5'- -aGCGGCugGCCAugacgccgucgcAGugCGCGGucuuguacccguuCGCg -3'
miRNA:   3'- ccCGCCGugCGGU------------UCugGCGCU-------------GCGa -5'
25081 3' -61 NC_005336.1 + 29359 0.66 0.697989
Target:  5'- cGGCGagacGCugGCCuuGGGCaCGCGcgccGCGCUg -3'
miRNA:   3'- cCCGC----CGugCGGu-UCUG-GCGC----UGCGA- -5'
25081 3' -61 NC_005336.1 + 82622 0.66 0.697989
Target:  5'- uGGUGGagcuGCGCCAGGAgCGaGAgGCUg -3'
miRNA:   3'- cCCGCCg---UGCGGUUCUgGCgCUgCGA- -5'
25081 3' -61 NC_005336.1 + 118207 0.66 0.697989
Target:  5'- --aCGGCGCGCUGAGGgCGCucaccGCGCUg -3'
miRNA:   3'- cccGCCGUGCGGUUCUgGCGc----UGCGA- -5'
25081 3' -61 NC_005336.1 + 99617 0.66 0.697989
Target:  5'- -cGCGGCGa-CCGGGugcuauGCCGCGGCGUg -3'
miRNA:   3'- ccCGCCGUgcGGUUC------UGGCGCUGCGa -5'
25081 3' -61 NC_005336.1 + 123075 0.66 0.697989
Target:  5'- cGGCGGC-CGCagacguGACCGUcgagGACGUg -3'
miRNA:   3'- cCCGCCGuGCGguu---CUGGCG----CUGCGa -5'
25081 3' -61 NC_005336.1 + 50963 0.66 0.697989
Target:  5'- -aGCGGCguGCGCCGGcgcGGCgGCcGGCGCa -3'
miRNA:   3'- ccCGCCG--UGCGGUU---CUGgCG-CUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.