miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25082 3' -61.3 NC_005336.1 + 119845 0.66 0.683165
Target:  5'- cGGCCGACGGggcCAGCAagaaacuggcgcgccACA-CCgCCUGc -3'
miRNA:   3'- aCCGGCUGCC---GUCGU---------------UGUaGGgGGGC- -5'
25082 3' -61.3 NC_005336.1 + 13592 0.66 0.679226
Target:  5'- gGGUCG-UGGCGGCcGC-UCUCCUCGc -3'
miRNA:   3'- aCCGGCuGCCGUCGuUGuAGGGGGGC- -5'
25082 3' -61.3 NC_005336.1 + 64820 0.66 0.679226
Target:  5'- aGGCCGACcuGGCGcucGCAGaCcgCCCUCgGg -3'
miRNA:   3'- aCCGGCUG--CCGU---CGUU-GuaGGGGGgC- -5'
25082 3' -61.3 NC_005336.1 + 52454 0.66 0.676268
Target:  5'- cGGCaugcuCGACGGCAGCGuCAucguguacgugggcUCCgCgCCCGg -3'
miRNA:   3'- aCCG-----GCUGCCGUCGUuGU--------------AGG-G-GGGC- -5'
25082 3' -61.3 NC_005336.1 + 126370 0.66 0.676268
Target:  5'- -cGCUGGCGGCcuucgggcgcgcggAGCuaacCAUCCCCgCCGc -3'
miRNA:   3'- acCGGCUGCCG--------------UCGuu--GUAGGGG-GGC- -5'
25082 3' -61.3 NC_005336.1 + 14047 0.66 0.669354
Target:  5'- cGGCCGcgaucAUGGCGGCGGCcgcgCCggCCUCGa -3'
miRNA:   3'- aCCGGC-----UGCCGUCGUUGua--GG--GGGGC- -5'
25082 3' -61.3 NC_005336.1 + 110048 0.66 0.669354
Target:  5'- gGGCgCGAUGGC-GCucuGCGUgCgCCCGg -3'
miRNA:   3'- aCCG-GCUGCCGuCGu--UGUAgGgGGGC- -5'
25082 3' -61.3 NC_005336.1 + 112833 0.66 0.669354
Target:  5'- aGGCgGcACGGC-GCGAgAUCCCggucugccuggaCCCGg -3'
miRNA:   3'- aCCGgC-UGCCGuCGUUgUAGGG------------GGGC- -5'
25082 3' -61.3 NC_005336.1 + 12320 0.66 0.669354
Target:  5'- aGGaaGGCGuGCAGUGGCGUgCgCCCGu -3'
miRNA:   3'- aCCggCUGC-CGUCGUUGUAgGgGGGC- -5'
25082 3' -61.3 NC_005336.1 + 89375 0.66 0.669354
Target:  5'- gGGCCGuacGCGGgaCGGC-ACGUCgCCCgCCGc -3'
miRNA:   3'- aCCGGC---UGCC--GUCGuUGUAG-GGG-GGC- -5'
25082 3' -61.3 NC_005336.1 + 71566 0.66 0.669354
Target:  5'- cGuCCGuCGGCAGCGGCAcgcgcgaggccUCCUCCgCGc -3'
miRNA:   3'- aCcGGCuGCCGUCGUUGU-----------AGGGGG-GC- -5'
25082 3' -61.3 NC_005336.1 + 38837 0.66 0.666386
Target:  5'- cGGUCGaagaucuccgcgguGCGGCGGCucuccGCGUCCUcgCCCa -3'
miRNA:   3'- aCCGGC--------------UGCCGUCGu----UGUAGGG--GGGc -5'
25082 3' -61.3 NC_005336.1 + 126695 0.66 0.659452
Target:  5'- aGGCCGucgcgcgcgugcACGGCAcGCGGCG-CCgCCUGc -3'
miRNA:   3'- aCCGGC------------UGCCGU-CGUUGUaGGgGGGC- -5'
25082 3' -61.3 NC_005336.1 + 14824 0.66 0.658461
Target:  5'- cGGCCGccaucugGCGGCAGagcacgaAGCcgUgCCCCGc -3'
miRNA:   3'- aCCGGC-------UGCCGUCg------UUGuaGgGGGGC- -5'
25082 3' -61.3 NC_005336.1 + 25441 0.66 0.658461
Target:  5'- cGGCCGGCGaaggccucgucgcGCAGCAGCGggUUgUCCGg -3'
miRNA:   3'- aCCGGCUGC-------------CGUCGUUGUa-GGgGGGC- -5'
25082 3' -61.3 NC_005336.1 + 115237 0.66 0.658461
Target:  5'- cGGUCGgcguacaACGGCGGCGACGUCgUCgUGc -3'
miRNA:   3'- aCCGGC-------UGCCGUCGUUGUAGgGGgGC- -5'
25082 3' -61.3 NC_005336.1 + 125080 0.66 0.649531
Target:  5'- gUGGCUGGCGGCAgucuucgccacGCGGCA-CCUCgagCCGc -3'
miRNA:   3'- -ACCGGCUGCCGU-----------CGUUGUaGGGG---GGC- -5'
25082 3' -61.3 NC_005336.1 + 34030 0.66 0.649531
Target:  5'- gGGuUUGACGGCucuGCGuGCGUCCUgCCCGa -3'
miRNA:   3'- aCC-GGCUGCCGu--CGU-UGUAGGG-GGGC- -5'
25082 3' -61.3 NC_005336.1 + 117226 0.66 0.649531
Target:  5'- gGuGCCGGagcaUGGCGGCGaccACGUCCUCgCGg -3'
miRNA:   3'- aC-CGGCU----GCCGUCGU---UGUAGGGGgGC- -5'
25082 3' -61.3 NC_005336.1 + 11411 0.66 0.639596
Target:  5'- gUGGCCGugGGCGugacgacggcGCAGCAgagCCgCgUGa -3'
miRNA:   3'- -ACCGGCugCCGU----------CGUUGUa--GGgGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.