miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25085 3' -50.9 NC_005336.1 + 105449 0.66 0.993142
Target:  5'- gCUGGCCccaccaccAGGGCUUCU-CGCCGu -3'
miRNA:   3'- gGAUCGGuucu----UCUUGAAGAcGCGGC- -5'
25085 3' -50.9 NC_005336.1 + 129084 0.66 0.993142
Target:  5'- cCCUGGCCGgcAGGccuGGGACgagCcGCcGCCGa -3'
miRNA:   3'- -GGAUCGGU--UCU---UCUUGaa-GaCG-CGGC- -5'
25085 3' -50.9 NC_005336.1 + 76166 0.66 0.993142
Target:  5'- ---cGCCGuuGAAGAGCggcgUCUGC-CCGa -3'
miRNA:   3'- ggauCGGUu-CUUCUUGa---AGACGcGGC- -5'
25085 3' -50.9 NC_005336.1 + 28534 0.66 0.993142
Target:  5'- cCUUGGCCAcGAacucgcGGAucuuGCUcaUGCGCCGg -3'
miRNA:   3'- -GGAUCGGUuCU------UCU----UGAagACGCGGC- -5'
25085 3' -50.9 NC_005336.1 + 13396 0.66 0.992093
Target:  5'- uCCUcGCCGGaaacgcGAAGGGCUUCgaGCGCa- -3'
miRNA:   3'- -GGAuCGGUU------CUUCUUGAAGa-CGCGgc -5'
25085 3' -50.9 NC_005336.1 + 93891 0.66 0.990921
Target:  5'- uUCUGGaCGaagaGGAGGAGCUUCcGCGgCGg -3'
miRNA:   3'- -GGAUCgGU----UCUUCUUGAAGaCGCgGC- -5'
25085 3' -50.9 NC_005336.1 + 85985 0.66 0.990921
Target:  5'- gCCUGGUaguuGAAGuGCUUCaucaGCGCCa -3'
miRNA:   3'- -GGAUCGguu-CUUCuUGAAGa---CGCGGc -5'
25085 3' -50.9 NC_005336.1 + 36138 0.66 0.990921
Target:  5'- gCCUGcguacGCgGAGGAGAACUcCUGCaCCu -3'
miRNA:   3'- -GGAU-----CGgUUCUUCUUGAaGACGcGGc -5'
25085 3' -50.9 NC_005336.1 + 95424 0.66 0.989617
Target:  5'- uCCUGGCUgAAGAAGAGCcacUUGCGgUCGc -3'
miRNA:   3'- -GGAUCGG-UUCUUCUUGaa-GACGC-GGC- -5'
25085 3' -50.9 NC_005336.1 + 128263 0.66 0.989617
Target:  5'- gCUGGCCGcGcgcguGGAGCgcgUGCGCCGc -3'
miRNA:   3'- gGAUCGGUuCu----UCUUGaagACGCGGC- -5'
25085 3' -50.9 NC_005336.1 + 48051 0.66 0.989617
Target:  5'- gCCccGCCGAGAucGGCUUUcGCGCCc -3'
miRNA:   3'- -GGauCGGUUCUucUUGAAGaCGCGGc -5'
25085 3' -50.9 NC_005336.1 + 88952 0.66 0.989617
Target:  5'- uCCgcGCCGAGAGcGGGCUcgUGCGCa- -3'
miRNA:   3'- -GGauCGGUUCUU-CUUGAagACGCGgc -5'
25085 3' -50.9 NC_005336.1 + 87790 0.66 0.989617
Target:  5'- aCCgcagGGCCGccggucGAAGAGCUgcgccagCUGCGCa- -3'
miRNA:   3'- -GGa---UCGGUu-----CUUCUUGAa------GACGCGgc -5'
25085 3' -50.9 NC_005336.1 + 128599 0.66 0.989617
Target:  5'- aCUGGCCucGGAucauAGAcgcGCUgCUGCGCgCGg -3'
miRNA:   3'- gGAUCGGu-UCU----UCU---UGAaGACGCG-GC- -5'
25085 3' -50.9 NC_005336.1 + 72221 0.66 0.986573
Target:  5'- gCCUGGCU-GGcGGAGCUguucaacgccuUCcGCGCCGg -3'
miRNA:   3'- -GGAUCGGuUCuUCUUGA-----------AGaCGCGGC- -5'
25085 3' -50.9 NC_005336.1 + 84924 0.66 0.986573
Target:  5'- --gAGCuCGAGGAGGGCgUCUGCcCCa -3'
miRNA:   3'- ggaUCG-GUUCUUCUUGaAGACGcGGc -5'
25085 3' -50.9 NC_005336.1 + 96688 0.66 0.986405
Target:  5'- aCUGGCCGGGGgguagccGGGACUaggggggagUCggcaGUGCCGg -3'
miRNA:   3'- gGAUCGGUUCU-------UCUUGA---------AGa---CGCGGC- -5'
25085 3' -50.9 NC_005336.1 + 126964 0.67 0.984815
Target:  5'- aCCUggagAGCgAGGAgcguccggacguGGAGCgcaUGCGCCGg -3'
miRNA:   3'- -GGA----UCGgUUCU------------UCUUGaagACGCGGC- -5'
25085 3' -50.9 NC_005336.1 + 81364 0.67 0.98463
Target:  5'- gCCUcgaGGCCGAGAAGAagcccacGCUcgugcaCUGCgugGCCGg -3'
miRNA:   3'- -GGA---UCGGUUCUUCU-------UGAa-----GACG---CGGC- -5'
25085 3' -50.9 NC_005336.1 + 61889 0.67 0.982886
Target:  5'- --aGGCCGGGcGGAACUUg-GCGUCGc -3'
miRNA:   3'- ggaUCGGUUCuUCUUGAAgaCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.