miRNA display CGI


Results 1 - 20 of 177 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25085 5' -61.7 NC_005336.1 + 78277 0.65 0.61917
Target:  5'- gCGgGCGUcgagucgaagguggGCAGCgucacGCUGAGCCccucgcggaUGCUGc -3'
miRNA:   3'- -GCgCGCG--------------CGUCGa----CGACUCGG---------ACGAC- -5'
25085 5' -61.7 NC_005336.1 + 10264 0.66 0.612122
Target:  5'- aGCGUcugccgGCGCAGCggcgUGCcGAGCCgGCg- -3'
miRNA:   3'- gCGCG------CGCGUCG----ACGaCUCGGaCGac -5'
25085 5' -61.7 NC_005336.1 + 58582 0.66 0.612122
Target:  5'- uGCGCGUGCuGggGCUGGGgcagccaugaaCCUGCg- -3'
miRNA:   3'- gCGCGCGCGuCgaCGACUC-----------GGACGac -5'
25085 5' -61.7 NC_005336.1 + 12088 0.66 0.612122
Target:  5'- gGCGCG-GCAGgaGCUacccauGGCCaUGCUGu -3'
miRNA:   3'- gCGCGCgCGUCgaCGAc-----UCGG-ACGAC- -5'
25085 5' -61.7 NC_005336.1 + 117216 0.66 0.612122
Target:  5'- aCGCG-GCGCAGgUGCcgGAGCaugGCg- -3'
miRNA:   3'- -GCGCgCGCGUCgACGa-CUCGga-CGac -5'
25085 5' -61.7 NC_005336.1 + 90458 0.66 0.612122
Target:  5'- aCGCGCGCGCGG--GCgauGGUCUGuCUGu -3'
miRNA:   3'- -GCGCGCGCGUCgaCGac-UCGGAC-GAC- -5'
25085 5' -61.7 NC_005336.1 + 15848 0.66 0.612122
Target:  5'- cCGCGCcCGCGGCga-UGAGCC-GCg- -3'
miRNA:   3'- -GCGCGcGCGUCGacgACUCGGaCGac -5'
25085 5' -61.7 NC_005336.1 + 57389 0.66 0.612122
Target:  5'- aGCGCGCGCAcCUGaCcGAGguCCUGgUGg -3'
miRNA:   3'- gCGCGCGCGUcGAC-GaCUC--GGACgAC- -5'
25085 5' -61.7 NC_005336.1 + 46395 0.66 0.612122
Target:  5'- aCGCGCGCGCccGC-GCgggGcGCCUGUUu -3'
miRNA:   3'- -GCGCGCGCGu-CGaCGa--CuCGGACGAc -5'
25085 5' -61.7 NC_005336.1 + 133062 0.66 0.612122
Target:  5'- gGCGCGUGCugcacacGCUGCUGcuGCUcaUGCg- -3'
miRNA:   3'- gCGCGCGCGu------CGACGACu-CGG--ACGac -5'
25085 5' -61.7 NC_005336.1 + 49537 0.66 0.612122
Target:  5'- cCGCGCGCcgguGCAGCgGCggccccgagacUGAGCgCcGCUGc -3'
miRNA:   3'- -GCGCGCG----CGUCGaCG-----------ACUCG-GaCGAC- -5'
25085 5' -61.7 NC_005336.1 + 78072 0.66 0.612122
Target:  5'- gCGCGCucuggaGCGCAcGCUGgUGAuGCCgUGCg- -3'
miRNA:   3'- -GCGCG------CGCGU-CGACgACU-CGG-ACGac -5'
25085 5' -61.7 NC_005336.1 + 54066 0.66 0.612122
Target:  5'- gCGCGUGuCGCGGCcGgUGucgaccacGGCCUGgCUGg -3'
miRNA:   3'- -GCGCGC-GCGUCGaCgAC--------UCGGAC-GAC- -5'
25085 5' -61.7 NC_005336.1 + 57951 0.66 0.612122
Target:  5'- gGC-CGCGC-GCUGCUGAacgcgGCgCUGCa- -3'
miRNA:   3'- gCGcGCGCGuCGACGACU-----CG-GACGac -5'
25085 5' -61.7 NC_005336.1 + 49996 0.66 0.609103
Target:  5'- uCGCGCuggagaaccugaagGCGCuGCUGCUGAuCgUGCg- -3'
miRNA:   3'- -GCGCG--------------CGCGuCGACGACUcGgACGac -5'
25085 5' -61.7 NC_005336.1 + 125192 0.66 0.602066
Target:  5'- uCGCGCGCaagaGCuGGCUGCcgcccGGGCgcaUGCUGg -3'
miRNA:   3'- -GCGCGCG----CG-UCGACGa----CUCGg--ACGAC- -5'
25085 5' -61.7 NC_005336.1 + 71761 0.66 0.602066
Target:  5'- cCGCGgGCGCGGCcGCUGccaccGCCccgagUGCg- -3'
miRNA:   3'- -GCGCgCGCGUCGaCGACu----CGG-----ACGac -5'
25085 5' -61.7 NC_005336.1 + 3951 0.66 0.602066
Target:  5'- gCGcCGCGCGCAGCaGCgccGCCaGCg- -3'
miRNA:   3'- -GC-GCGCGCGUCGaCGacuCGGaCGac -5'
25085 5' -61.7 NC_005336.1 + 9183 0.66 0.602066
Target:  5'- aGCGCGCGCAGCgcgcGCUccaccagucgcGAGCgaugGCg- -3'
miRNA:   3'- gCGCGCGCGUCGa---CGA-----------CUCGga--CGac -5'
25085 5' -61.7 NC_005336.1 + 100884 0.66 0.592031
Target:  5'- gCGCGCGCGCGGUcgGCgcgGcgcggaggcAGCCUcGCa- -3'
miRNA:   3'- -GCGCGCGCGUCGa-CGa--C---------UCGGA-CGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.