miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25088 3' -50.8 NC_005336.1 + 24455 0.66 0.993963
Target:  5'- --------cCACCGGCGUGAUgucgaaGGCGCa -3'
miRNA:   3'- guacaagcaGUGGCUGUACUA------CCGCG- -5'
25088 3' -50.8 NC_005336.1 + 38288 0.66 0.993963
Target:  5'- ----cUCGUCGCCGGCGgcaacGCGCu -3'
miRNA:   3'- guacaAGCAGUGGCUGUacuacCGCG- -5'
25088 3' -50.8 NC_005336.1 + 16417 0.66 0.993963
Target:  5'- uCGUGcacggCGUCGCCGucCAUGAgcacGGUGUu -3'
miRNA:   3'- -GUACaa---GCAGUGGCu-GUACUa---CCGCG- -5'
25088 3' -50.8 NC_005336.1 + 125669 0.66 0.993019
Target:  5'- aCGUGaUCGcCGCgGACcuugagggccUGAUGGCGUa -3'
miRNA:   3'- -GUACaAGCaGUGgCUGu---------ACUACCGCG- -5'
25088 3' -50.8 NC_005336.1 + 120894 0.66 0.991961
Target:  5'- --aGUUCGaCGCgGAguuCGUG-UGGCGCa -3'
miRNA:   3'- guaCAAGCaGUGgCU---GUACuACCGCG- -5'
25088 3' -50.8 NC_005336.1 + 45776 0.66 0.991961
Target:  5'- --aGgagCG-CACCGGCAUGucgagcaGGCGCu -3'
miRNA:   3'- guaCaa-GCaGUGGCUGUACua-----CCGCG- -5'
25088 3' -50.8 NC_005336.1 + 53070 0.66 0.991961
Target:  5'- aCAUGUUCuGUCugCucuCGUcGGUGGUGUg -3'
miRNA:   3'- -GUACAAG-CAGugGcu-GUA-CUACCGCG- -5'
25088 3' -50.8 NC_005336.1 + 103565 0.66 0.991961
Target:  5'- gCGUGcUCGUCAUgGACGcGGaGGCGg -3'
miRNA:   3'- -GUACaAGCAGUGgCUGUaCUaCCGCg -5'
25088 3' -50.8 NC_005336.1 + 115936 0.66 0.991961
Target:  5'- aGUGcUCGUCGuCCGugAUGuggaGGCGa -3'
miRNA:   3'- gUACaAGCAGU-GGCugUACua--CCGCg -5'
25088 3' -50.8 NC_005336.1 + 24608 0.66 0.991961
Target:  5'- gCGUGcccgcgUUGUCGCCGAuCAUGcccUGGcCGCu -3'
miRNA:   3'- -GUACa-----AGCAGUGGCU-GUACu--ACC-GCG- -5'
25088 3' -50.8 NC_005336.1 + 18468 0.66 0.99078
Target:  5'- ----cUCGcCGCCGGCGcGAgcaccuccgUGGCGCa -3'
miRNA:   3'- guacaAGCaGUGGCUGUaCU---------ACCGCG- -5'
25088 3' -50.8 NC_005336.1 + 30284 0.66 0.99078
Target:  5'- ----aUCGUCACCG-CGUGcGUcGCGCg -3'
miRNA:   3'- guacaAGCAGUGGCuGUAC-UAcCGCG- -5'
25088 3' -50.8 NC_005336.1 + 67468 0.66 0.99078
Target:  5'- gAUGgacagCACCGACGUGGccGCGCu -3'
miRNA:   3'- gUACaagcaGUGGCUGUACUacCGCG- -5'
25088 3' -50.8 NC_005336.1 + 44279 0.66 0.99078
Target:  5'- --cGcgCGUCACgGACGcGAUGcucGCGCa -3'
miRNA:   3'- guaCaaGCAGUGgCUGUaCUAC---CGCG- -5'
25088 3' -50.8 NC_005336.1 + 92390 0.66 0.99078
Target:  5'- cCAUGcgcgcgUCGUCGCCGACGcccagcGGCuGCg -3'
miRNA:   3'- -GUACa-----AGCAGUGGCUGUacua--CCG-CG- -5'
25088 3' -50.8 NC_005336.1 + 86846 0.66 0.9904
Target:  5'- -uUGaccgCGUCGCUGAgCGUGAUcagacgcagcuucgGGCGCg -3'
miRNA:   3'- guACaa--GCAGUGGCU-GUACUA--------------CCGCG- -5'
25088 3' -50.8 NC_005336.1 + 55804 0.66 0.989466
Target:  5'- -----aCGUCuuCCGAuuCAUGAUaGGCGCg -3'
miRNA:   3'- guacaaGCAGu-GGCU--GUACUA-CCGCG- -5'
25088 3' -50.8 NC_005336.1 + 64811 0.66 0.989466
Target:  5'- -----gCGUCACCGAgGccGAccUGGCGCu -3'
miRNA:   3'- guacaaGCAGUGGCUgUa-CU--ACCGCG- -5'
25088 3' -50.8 NC_005336.1 + 55846 0.66 0.989466
Target:  5'- gCGUGcUCGagaACgGGCgcGUGGUGGCGCc -3'
miRNA:   3'- -GUACaAGCag-UGgCUG--UACUACCGCG- -5'
25088 3' -50.8 NC_005336.1 + 133293 0.66 0.989466
Target:  5'- aCGUGUUCGacCGCgGGgcCGUGAucguguucccucUGGCGCg -3'
miRNA:   3'- -GUACAAGCa-GUGgCU--GUACU------------ACCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.