miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25088 3' -50.8 NC_005336.1 + 3425 0.68 0.967039
Target:  5'- cCAUGUgccgcgCGUCGCCGACGgucaGGCa- -3'
miRNA:   3'- -GUACAa-----GCAGUGGCUGUacuaCCGcg -5'
25088 3' -50.8 NC_005336.1 + 3425 0.68 0.967039
Target:  5'- cCAUGUgccgcgCGUCGCCGACGgucaGGCa- -3'
miRNA:   3'- -GUACAa-----GCAGUGGCUGUacuaCCGcg -5'
25088 3' -50.8 NC_005336.1 + 11406 0.74 0.762251
Target:  5'- --aGUUCGUgGCCGuggGCGUGAcgacGGCGCa -3'
miRNA:   3'- guaCAAGCAgUGGC---UGUACUa---CCGCG- -5'
25088 3' -50.8 NC_005336.1 + 13663 0.67 0.986404
Target:  5'- -----cCGUC-CgGACAUGAgccGGCGCa -3'
miRNA:   3'- guacaaGCAGuGgCUGUACUa--CCGCG- -5'
25088 3' -50.8 NC_005336.1 + 16417 0.66 0.993963
Target:  5'- uCGUGcacggCGUCGCCGucCAUGAgcacGGUGUu -3'
miRNA:   3'- -GUACaa---GCAGUGGCu-GUACUa---CCGCG- -5'
25088 3' -50.8 NC_005336.1 + 18468 0.66 0.99078
Target:  5'- ----cUCGcCGCCGGCGcGAgcaccuccgUGGCGCa -3'
miRNA:   3'- guacaAGCaGUGGCUGUaCU---------ACCGCG- -5'
25088 3' -50.8 NC_005336.1 + 18750 0.68 0.970171
Target:  5'- -uUGgcgcgUCGUCGCgGACAguuggaagagUGGUGGUGUc -3'
miRNA:   3'- guACa----AGCAGUGgCUGU----------ACUACCGCG- -5'
25088 3' -50.8 NC_005336.1 + 20244 0.67 0.982497
Target:  5'- aCAUGaacgCGuUCugUGGCGUGAUcgccaggGGCGCa -3'
miRNA:   3'- -GUACaa--GC-AGugGCUGUACUA-------CCGCG- -5'
25088 3' -50.8 NC_005336.1 + 24455 0.66 0.993963
Target:  5'- --------cCACCGGCGUGAUgucgaaGGCGCa -3'
miRNA:   3'- guacaagcaGUGGCUGUACUA------CCGCG- -5'
25088 3' -50.8 NC_005336.1 + 24608 0.66 0.991961
Target:  5'- gCGUGcccgcgUUGUCGCCGAuCAUGcccUGGcCGCu -3'
miRNA:   3'- -GUACa-----AGCAGUGGCU-GUACu--ACC-GCG- -5'
25088 3' -50.8 NC_005336.1 + 24710 0.71 0.904203
Target:  5'- --cGUUCGUCAgCGGCGaGGUGuCGCa -3'
miRNA:   3'- guaCAAGCAGUgGCUGUaCUACcGCG- -5'
25088 3' -50.8 NC_005336.1 + 30284 0.66 0.99078
Target:  5'- ----aUCGUCACCG-CGUGcGUcGCGCg -3'
miRNA:   3'- guacaAGCAGUGGCuGUAC-UAcCGCG- -5'
25088 3' -50.8 NC_005336.1 + 35391 0.68 0.975786
Target:  5'- gCGUGgugaacUUGUCcCCGAg--GAUGGCGCg -3'
miRNA:   3'- -GUACa-----AGCAGuGGCUguaCUACCGCG- -5'
25088 3' -50.8 NC_005336.1 + 38288 0.66 0.993963
Target:  5'- ----cUCGUCGCCGGCGgcaacGCGCu -3'
miRNA:   3'- guacaAGCAGUGGCUGUacuacCGCG- -5'
25088 3' -50.8 NC_005336.1 + 39729 0.71 0.897598
Target:  5'- ---cUUCGagcgCACCGGCGUGAUGaCGCa -3'
miRNA:   3'- guacAAGCa---GUGGCUGUACUACcGCG- -5'
25088 3' -50.8 NC_005336.1 + 41046 0.78 0.553763
Target:  5'- aCGUGUaccgcugCGUCGgCGACGUGGUGGUGUc -3'
miRNA:   3'- -GUACAa------GCAGUgGCUGUACUACCGCG- -5'
25088 3' -50.8 NC_005336.1 + 44176 0.67 0.98801
Target:  5'- -cUGggcgUgGUCGCgGACAUGAUcGCGUg -3'
miRNA:   3'- guACa---AgCAGUGgCUGUACUAcCGCG- -5'
25088 3' -50.8 NC_005336.1 + 44279 0.66 0.99078
Target:  5'- --cGcgCGUCACgGACGcGAUGcucGCGCa -3'
miRNA:   3'- guaCaaGCAGUGgCUGUaCUAC---CGCG- -5'
25088 3' -50.8 NC_005336.1 + 45776 0.66 0.991961
Target:  5'- --aGgagCG-CACCGGCAUGucgagcaGGCGCu -3'
miRNA:   3'- guaCaa-GCaGUGGCUGUACua-----CCGCG- -5'
25088 3' -50.8 NC_005336.1 + 47137 0.68 0.978283
Target:  5'- uCAUGUUCGagUCGCgCGugGUcAUGGaCGCc -3'
miRNA:   3'- -GUACAAGC--AGUG-GCugUAcUACC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.