miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25088 3' -50.8 NC_005336.1 + 55846 0.66 0.989466
Target:  5'- gCGUGcUCGagaACgGGCgcGUGGUGGCGCc -3'
miRNA:   3'- -GUACaAGCag-UGgCUG--UACUACCGCG- -5'
25088 3' -50.8 NC_005336.1 + 130322 0.67 0.9827
Target:  5'- gCGUGcUCGcggcUCugUGuggcguACGUGGUGGCGCg -3'
miRNA:   3'- -GUACaAGC----AGugGC------UGUACUACCGCG- -5'
25088 3' -50.8 NC_005336.1 + 56130 0.67 0.985717
Target:  5'- --aGgaCGUCGCgGACGggaagcuggugccGAUGGCGCc -3'
miRNA:   3'- guaCaaGCAGUGgCUGUa------------CUACCGCG- -5'
25088 3' -50.8 NC_005336.1 + 13663 0.67 0.986404
Target:  5'- -----cCGUC-CgGACAUGAgccGGCGCa -3'
miRNA:   3'- guacaaGCAGuGgCUGUACUa--CCGCG- -5'
25088 3' -50.8 NC_005336.1 + 131223 0.67 0.986404
Target:  5'- uCAUGgacUUGcUCAUCGGCAUG--GGCGCc -3'
miRNA:   3'- -GUACa--AGC-AGUGGCUGUACuaCCGCG- -5'
25088 3' -50.8 NC_005336.1 + 44176 0.67 0.98801
Target:  5'- -cUGggcgUgGUCGCgGACAUGAUcGCGUg -3'
miRNA:   3'- guACa---AgCAGUGgCUGUACUAcCGCG- -5'
25088 3' -50.8 NC_005336.1 + 102466 0.67 0.98801
Target:  5'- ---cUUCaUCACCGugaacgugauCGUGAUGGUGCa -3'
miRNA:   3'- guacAAGcAGUGGCu---------GUACUACCGCG- -5'
25088 3' -50.8 NC_005336.1 + 64811 0.66 0.989466
Target:  5'- -----gCGUCACCGAgGccGAccUGGCGCu -3'
miRNA:   3'- guacaaGCAGUGGCUgUa-CU--ACCGCG- -5'
25088 3' -50.8 NC_005336.1 + 55804 0.66 0.989466
Target:  5'- -----aCGUCuuCCGAuuCAUGAUaGGCGCg -3'
miRNA:   3'- guacaaGCAGu-GGCU--GUACUA-CCGCG- -5'
25088 3' -50.8 NC_005336.1 + 51818 0.67 0.9827
Target:  5'- --cGUUCGUCGCCGcgcuguccgACGacGA-GGCGCu -3'
miRNA:   3'- guaCAAGCAGUGGC---------UGUa-CUaCCGCG- -5'
25088 3' -50.8 NC_005336.1 + 50790 0.67 0.9827
Target:  5'- ----cUCGUgggCACCGAgAUGGUGGUGg -3'
miRNA:   3'- guacaAGCA---GUGGCUgUACUACCGCg -5'
25088 3' -50.8 NC_005336.1 + 123120 0.68 0.978283
Target:  5'- --aGUUCGgUGCgGACGUGAacuacaggGGCGCg -3'
miRNA:   3'- guaCAAGCaGUGgCUGUACUa-------CCGCG- -5'
25088 3' -50.8 NC_005336.1 + 11406 0.74 0.762251
Target:  5'- --aGUUCGUgGCCGuggGCGUGAcgacGGCGCa -3'
miRNA:   3'- guaCAAGCAgUGGC---UGUACUa---CCGCG- -5'
25088 3' -50.8 NC_005336.1 + 39729 0.71 0.897598
Target:  5'- ---cUUCGagcgCACCGGCGUGAUGaCGCa -3'
miRNA:   3'- guacAAGCa---GUGGCUGUACUACcGCG- -5'
25088 3' -50.8 NC_005336.1 + 93971 0.71 0.916657
Target:  5'- -----aCGUCGCCGGa--GGUGGCGCc -3'
miRNA:   3'- guacaaGCAGUGGCUguaCUACCGCG- -5'
25088 3' -50.8 NC_005336.1 + 47351 0.69 0.960092
Target:  5'- --aGcgCGaccUCGCgGACAcGAUGGCGCg -3'
miRNA:   3'- guaCaaGC---AGUGgCUGUaCUACCGCG- -5'
25088 3' -50.8 NC_005336.1 + 3425 0.68 0.967039
Target:  5'- cCAUGUgccgcgCGUCGCCGACGgucaGGCa- -3'
miRNA:   3'- -GUACAa-----GCAGUGGCUGUacuaCCGcg -5'
25088 3' -50.8 NC_005336.1 + 74796 0.68 0.971362
Target:  5'- gGUGUUCcugCGCCccgagGACgcggagggcgugggcGUGAUGGCGCg -3'
miRNA:   3'- gUACAAGca-GUGG-----CUG---------------UACUACCGCG- -5'
25088 3' -50.8 NC_005336.1 + 118167 0.68 0.973084
Target:  5'- gCAUGUaUCGUCGCCGAUguccaggaaGUgccucaugcaGAcGGCGCg -3'
miRNA:   3'- -GUACA-AGCAGUGGCUG---------UA----------CUaCCGCG- -5'
25088 3' -50.8 NC_005336.1 + 47137 0.68 0.978283
Target:  5'- uCAUGUUCGagUCGCgCGugGUcAUGGaCGCc -3'
miRNA:   3'- -GUACAAGC--AGUG-GCugUAcUACC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.