miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25088 5' -58.2 NC_005336.1 + 117484 0.65 0.809719
Target:  5'- -cGCGCucGGCGGCGGCgacgucggggucCACGGAGu- -3'
miRNA:   3'- gaCGCG--UCGCUGCCGac----------GUGCCUUgu -5'
25088 5' -58.2 NC_005336.1 + 15350 0.66 0.804434
Target:  5'- -cGCGCAccaccucCGGCGGCagcgcGCACGGAcACAc -3'
miRNA:   3'- gaCGCGUc------GCUGCCGa----CGUGCCU-UGU- -5'
25088 5' -58.2 NC_005336.1 + 62596 0.66 0.804434
Target:  5'- gUGCGCucGCuggacccGCGGCUGCugGGcGCc -3'
miRNA:   3'- gACGCGu-CGc------UGCCGACGugCCuUGu -5'
25088 5' -58.2 NC_005336.1 + 93947 0.66 0.804434
Target:  5'- -gGUGCuGCGACGaGCUGgUGCGGGcggGCGc -3'
miRNA:   3'- gaCGCGuCGCUGC-CGAC-GUGCCU---UGU- -5'
25088 5' -58.2 NC_005336.1 + 44308 0.66 0.804434
Target:  5'- aCUGCGCAGCuGCugGGCUacgGCGCGaGuGCGg -3'
miRNA:   3'- -GACGCGUCGcUG--CCGA---CGUGC-CuUGU- -5'
25088 5' -58.2 NC_005336.1 + 99436 0.66 0.804434
Target:  5'- -gGUGCAcGCGGC-GCUGCguGCGGAggGCGa -3'
miRNA:   3'- gaCGCGU-CGCUGcCGACG--UGCCU--UGU- -5'
25088 5' -58.2 NC_005336.1 + 33728 0.66 0.804434
Target:  5'- aUGUaCAGCGA-GGaCUcGCGCGGGACGc -3'
miRNA:   3'- gACGcGUCGCUgCC-GA-CGUGCCUUGU- -5'
25088 5' -58.2 NC_005336.1 + 64747 0.66 0.804434
Target:  5'- uCUGCGCAcacGCG-CGaGCucugUGCGgCGGAGCGg -3'
miRNA:   3'- -GACGCGU---CGCuGC-CG----ACGU-GCCUUGU- -5'
25088 5' -58.2 NC_005336.1 + 130627 0.66 0.804434
Target:  5'- -cGCGCuGCG-CGcGCUGCGCGacuGCGu -3'
miRNA:   3'- gaCGCGuCGCuGC-CGACGUGCcu-UGU- -5'
25088 5' -58.2 NC_005336.1 + 80446 0.66 0.804434
Target:  5'- -cGCGCAGgcCGACGcccGCgGCGCGGAu-- -3'
miRNA:   3'- gaCGCGUC--GCUGC---CGaCGUGCCUugu -5'
25088 5' -58.2 NC_005336.1 + 120421 0.66 0.801771
Target:  5'- -cGCGCAGCGugcacaacaucaacGCGGCcuuCACGGAc-- -3'
miRNA:   3'- gaCGCGUCGC--------------UGCCGac-GUGCCUugu -5'
25088 5' -58.2 NC_005336.1 + 13531 0.66 0.795504
Target:  5'- -cGCGgcCAGCGGCaccGGCguggGCACGGuguACAc -3'
miRNA:   3'- gaCGC--GUCGCUG---CCGa---CGUGCCu--UGU- -5'
25088 5' -58.2 NC_005336.1 + 45311 0.66 0.795504
Target:  5'- aCUGCGCcucGGCGuCGGCcGUcucgGCGGggUc -3'
miRNA:   3'- -GACGCG---UCGCuGCCGaCG----UGCCuuGu -5'
25088 5' -58.2 NC_005336.1 + 50511 0.66 0.795504
Target:  5'- -cGCGCccGCGGCGGaagGCcuguCGGGACGc -3'
miRNA:   3'- gaCGCGu-CGCUGCCga-CGu---GCCUUGU- -5'
25088 5' -58.2 NC_005336.1 + 132960 0.66 0.795504
Target:  5'- -cGCGCGGCuGCuGCUGgACGcGGGCGc -3'
miRNA:   3'- gaCGCGUCGcUGcCGACgUGC-CUUGU- -5'
25088 5' -58.2 NC_005336.1 + 118693 0.66 0.795504
Target:  5'- -cGCGCaAGCGcaACGGCUccggccgcaagGCACcGAACAa -3'
miRNA:   3'- gaCGCG-UCGC--UGCCGA-----------CGUGcCUUGU- -5'
25088 5' -58.2 NC_005336.1 + 14976 0.66 0.795504
Target:  5'- -cGUGCAGCGGCGaGCgccgaGCGCcGGGCc -3'
miRNA:   3'- gaCGCGUCGCUGC-CGa----CGUGcCUUGu -5'
25088 5' -58.2 NC_005336.1 + 58690 0.66 0.795504
Target:  5'- -gGC-CAGCGGCGGCcccGCGCGcGuGCAc -3'
miRNA:   3'- gaCGcGUCGCUGCCGa--CGUGC-CuUGU- -5'
25088 5' -58.2 NC_005336.1 + 115441 0.66 0.795504
Target:  5'- -gGCGaCGGCGacGCGGCcGUGCGGAuauuCAa -3'
miRNA:   3'- gaCGC-GUCGC--UGCCGaCGUGCCUu---GU- -5'
25088 5' -58.2 NC_005336.1 + 72603 0.66 0.795504
Target:  5'- cCUGCGCaucAGCaACGGCgUGCucuACgGGAACGa -3'
miRNA:   3'- -GACGCG---UCGcUGCCG-ACG---UG-CCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.