miRNA display CGI


Results 1 - 20 of 250 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25088 5' -58.2 NC_005336.1 + 108649 1.08 0.001771
Target:  5'- cCUGCGCAGCGACGGCUGCACGGAACAc -3'
miRNA:   3'- -GACGCGUCGCUGCCGACGUGCCUUGU- -5'
25088 5' -58.2 NC_005336.1 + 34747 0.8 0.143027
Target:  5'- uUGCGCAGCGACGGCggaACGcGAACGc -3'
miRNA:   3'- gACGCGUCGCUGCCGacgUGC-CUUGU- -5'
25088 5' -58.2 NC_005336.1 + 93446 0.8 0.150541
Target:  5'- -gGCGCGGCGGCGGgaGCuagaaGCGGAACu -3'
miRNA:   3'- gaCGCGUCGCUGCCgaCG-----UGCCUUGu -5'
25088 5' -58.2 NC_005336.1 + 58153 0.79 0.170916
Target:  5'- gCUGCGCGGCGACGGCgcgGC-CGcGAugGc -3'
miRNA:   3'- -GACGCGUCGCUGCCGa--CGuGC-CUugU- -5'
25088 5' -58.2 NC_005336.1 + 87946 0.78 0.19372
Target:  5'- -aGgGCGGCGGCGGaCUGCACGGcGCc -3'
miRNA:   3'- gaCgCGUCGCUGCC-GACGUGCCuUGu -5'
25088 5' -58.2 NC_005336.1 + 3588 0.78 0.19372
Target:  5'- cCUGCGCAGCGAgGGgUGCAUGGu--- -3'
miRNA:   3'- -GACGCGUCGCUgCCgACGUGCCuugu -5'
25088 5' -58.2 NC_005336.1 + 99930 0.78 0.19372
Target:  5'- -cGCGCugauGCGGCGGCUGCguGCGGAggGCGc -3'
miRNA:   3'- gaCGCGu---CGCUGCCGACG--UGCCU--UGU- -5'
25088 5' -58.2 NC_005336.1 + 3588 0.78 0.19372
Target:  5'- cCUGCGCAGCGAgGGgUGCAUGGu--- -3'
miRNA:   3'- -GACGCGUCGCUgCCgACGUGCCuugu -5'
25088 5' -58.2 NC_005336.1 + 38358 0.78 0.208649
Target:  5'- -cGCGCAGCGugGGCgUGCuCGGcAACGc -3'
miRNA:   3'- gaCGCGUCGCugCCG-ACGuGCC-UUGU- -5'
25088 5' -58.2 NC_005336.1 + 59158 0.78 0.213841
Target:  5'- -gGCGCgGGCGACGGCUGgAUGGuGCAc -3'
miRNA:   3'- gaCGCG-UCGCUGCCGACgUGCCuUGU- -5'
25088 5' -58.2 NC_005336.1 + 96532 0.77 0.22456
Target:  5'- -cGCGCuccuCGACGGCcGCACGGAACu -3'
miRNA:   3'- gaCGCGuc--GCUGCCGaCGUGCCUUGu -5'
25088 5' -58.2 NC_005336.1 + 80961 0.77 0.235731
Target:  5'- -cGCGCAGCGcGCaGGCUGCGCaGGGCGc -3'
miRNA:   3'- gaCGCGUCGC-UG-CCGACGUGcCUUGU- -5'
25088 5' -58.2 NC_005336.1 + 58612 0.76 0.247365
Target:  5'- cCUGCGCAuguGCGGCGGCUGC-CGccGCAa -3'
miRNA:   3'- -GACGCGU---CGCUGCCGACGuGCcuUGU- -5'
25088 5' -58.2 NC_005336.1 + 133701 0.76 0.265072
Target:  5'- gCUGCGCGGCGAgGGCgcgcgccUGCugGcGGGCGa -3'
miRNA:   3'- -GACGCGUCGCUgCCG-------ACGugC-CUUGU- -5'
25088 5' -58.2 NC_005336.1 + 86258 0.75 0.285123
Target:  5'- cCUGCaGCAGCGcCGGCgcgcGCGCGGAGu- -3'
miRNA:   3'- -GACG-CGUCGCuGCCGa---CGUGCCUUgu -5'
25088 5' -58.2 NC_005336.1 + 136626 0.75 0.291842
Target:  5'- gCUGCgGCAGCuggaGCGGCUGCgccgcGCGGAGCu -3'
miRNA:   3'- -GACG-CGUCGc---UGCCGACG-----UGCCUUGu -5'
25088 5' -58.2 NC_005336.1 + 64725 0.75 0.291842
Target:  5'- -cGCGCGGCG-CGGCU-CGCGGAcggGCAg -3'
miRNA:   3'- gaCGCGUCGCuGCCGAcGUGCCU---UGU- -5'
25088 5' -58.2 NC_005336.1 + 136626 0.75 0.291842
Target:  5'- gCUGCgGCAGCuggaGCGGCUGCgccgcGCGGAGCu -3'
miRNA:   3'- -GACG-CGUCGc---UGCCGACG-----UGCCUUGu -5'
25088 5' -58.2 NC_005336.1 + 60909 0.75 0.298683
Target:  5'- -cGCGCGGCGGCGuGC-GCAUGGAccGCGc -3'
miRNA:   3'- gaCGCGUCGCUGC-CGaCGUGCCU--UGU- -5'
25088 5' -58.2 NC_005336.1 + 100885 0.74 0.334749
Target:  5'- -cGCGCGcGCGGuCGGCgcgGCGCGGAGgCAg -3'
miRNA:   3'- gaCGCGU-CGCU-GCCGa--CGUGCCUU-GU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.