miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25088 5' -58.2 NC_005336.1 + 3507 0.74 0.350041
Target:  5'- -gGCcgGCAGCGGCGGC-GCcGCGGGGCGg -3'
miRNA:   3'- gaCG--CGUCGCUGCCGaCG-UGCCUUGU- -5'
25088 5' -58.2 NC_005336.1 + 3507 0.74 0.350041
Target:  5'- -gGCcgGCAGCGGCGGC-GCcGCGGGGCGg -3'
miRNA:   3'- gaCG--CGUCGCUGCCGaCG-UGCCUUGU- -5'
25088 5' -58.2 NC_005336.1 + 3588 0.78 0.19372
Target:  5'- cCUGCGCAGCGAgGGgUGCAUGGu--- -3'
miRNA:   3'- -GACGCGUCGCUgCCgACGUGCCuugu -5'
25088 5' -58.2 NC_005336.1 + 3588 0.78 0.19372
Target:  5'- cCUGCGCAGCGAgGGgUGCAUGGu--- -3'
miRNA:   3'- -GACGCGUCGCUgCCgACGUGCCuugu -5'
25088 5' -58.2 NC_005336.1 + 3742 0.67 0.757451
Target:  5'- -gGCGCGGUGAgggaagcCGGC-GCGCGGGc-- -3'
miRNA:   3'- gaCGCGUCGCU-------GCCGaCGUGCCUugu -5'
25088 5' -58.2 NC_005336.1 + 3742 0.67 0.757451
Target:  5'- -gGCGCGGUGAgggaagcCGGC-GCGCGGGc-- -3'
miRNA:   3'- gaCGCGUCGCU-------GCCGaCGUGCCUugu -5'
25088 5' -58.2 NC_005336.1 + 5509 0.67 0.748828
Target:  5'- -cGCGCAGuCGGCGGCcuCugGGGucuccGCAg -3'
miRNA:   3'- gaCGCGUC-GCUGCCGacGugCCU-----UGU- -5'
25088 5' -58.2 NC_005336.1 + 6200 0.68 0.648968
Target:  5'- -cGCGCAcgagcaguuccGuCGGCGGCcgGCGCGcGAGCAc -3'
miRNA:   3'- gaCGCGU-----------C-GCUGCCGa-CGUGC-CUUGU- -5'
25088 5' -58.2 NC_005336.1 + 7489 0.69 0.618358
Target:  5'- -gGCGC-GCGGCGGUcGCAC-GAGCGg -3'
miRNA:   3'- gaCGCGuCGCUGCCGaCGUGcCUUGU- -5'
25088 5' -58.2 NC_005336.1 + 9220 0.7 0.537696
Target:  5'- -gGCGCAuggccGCGAUGcgUGCACGGAGCGg -3'
miRNA:   3'- gaCGCGU-----CGCUGCcgACGUGCCUUGU- -5'
25088 5' -58.2 NC_005336.1 + 9290 0.67 0.762203
Target:  5'- -cGCGCGGCGcgagagcaggcuccGCGGCgggcGCGCGGccaccaggaucuccAGCAg -3'
miRNA:   3'- gaCGCGUCGC--------------UGCCGa---CGUGCC--------------UUGU- -5'
25088 5' -58.2 NC_005336.1 + 9360 0.67 0.748828
Target:  5'- gUGcCGCAGCGcACGGCgUGUAUGGccGCu -3'
miRNA:   3'- gAC-GCGUCGC-UGCCG-ACGUGCCu-UGu -5'
25088 5' -58.2 NC_005336.1 + 9632 0.66 0.767868
Target:  5'- -cGCGCgAGCG-CGGCcugGUGCGcGAGCGc -3'
miRNA:   3'- gaCGCG-UCGCuGCCGa--CGUGC-CUUGU- -5'
25088 5' -58.2 NC_005336.1 + 9675 0.69 0.618358
Target:  5'- cCUGCGCGgccGCGGCGGCgGCcuccuCGGcGGCGg -3'
miRNA:   3'- -GACGCGU---CGCUGCCGaCGu----GCC-UUGU- -5'
25088 5' -58.2 NC_005336.1 + 9814 0.66 0.786427
Target:  5'- -cGUGCAGCGGCGuGUUGCcgauuCGGuuccGCGc -3'
miRNA:   3'- gaCGCGUCGCUGC-CGACGu----GCCu---UGU- -5'
25088 5' -58.2 NC_005336.1 + 10082 0.74 0.334749
Target:  5'- -aGCGCGGCGAUGGUgcccggGUGCGuGGACAu -3'
miRNA:   3'- gaCGCGUCGCUGCCGa-----CGUGC-CUUGU- -5'
25088 5' -58.2 NC_005336.1 + 10143 0.68 0.679458
Target:  5'- -gGCGCucGCGGCGGUgUGCACGucgugcgaGAGCAc -3'
miRNA:   3'- gaCGCGu-CGCUGCCG-ACGUGC--------CUUGU- -5'
25088 5' -58.2 NC_005336.1 + 10274 0.69 0.608164
Target:  5'- -gGCGCAGCGGCGuGCcgaGC-CGGcGCAc -3'
miRNA:   3'- gaCGCGUCGCUGC-CGa--CGuGCCuUGU- -5'
25088 5' -58.2 NC_005336.1 + 10382 0.66 0.766926
Target:  5'- -cGCGgGGgGGCgGGCUgucuucgaaggcgGCGCGGAGCu -3'
miRNA:   3'- gaCGCgUCgCUG-CCGA-------------CGUGCCUUGu -5'
25088 5' -58.2 NC_005336.1 + 10419 0.71 0.508315
Target:  5'- -cGCGCA-CGACGGCgggguccgUGC-CGGAACGg -3'
miRNA:   3'- gaCGCGUcGCUGCCG--------ACGuGCCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.