miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2509 5' -52.3 NC_001454.1 + 27957 0.67 0.712458
Target:  5'- aCUCG-GUG--GGCCGGuggaGGUGGCAg -3'
miRNA:   3'- -GGGCaCAUuuUUGGCCug--CCACCGUa -5'
2509 5' -52.3 NC_001454.1 + 9240 0.67 0.701117
Target:  5'- gUCGcaagGUAA--GCUaaGGACGGUGGCAUg -3'
miRNA:   3'- gGGCa---CAUUuuUGG--CCUGCCACCGUA- -5'
2509 5' -52.3 NC_001454.1 + 21758 0.68 0.64471
Target:  5'- aCCCGagucgagccaaggugGUAcAAAACCGGugGG-GGCGc -3'
miRNA:   3'- -GGGCa--------------CAU-UUUUGGCCugCCaCCGUa -5'
2509 5' -52.3 NC_001454.1 + 16315 0.68 0.620357
Target:  5'- uUCCGcgGUA---ACCGGGCGuUGGCGUg -3'
miRNA:   3'- -GGGCa-CAUuuuUGGCCUGCcACCGUA- -5'
2509 5' -52.3 NC_001454.1 + 10325 0.69 0.54912
Target:  5'- gCCGUugcucucuccGGAGCCGG-CGGUGGCAa -3'
miRNA:   3'- gGGCAcau-------UUUUGGCCuGCCACCGUa -5'
2509 5' -52.3 NC_001454.1 + 12661 1.07 0.001509
Target:  5'- gCCCGUGUAAAAACCGGACGGUGGCAUc -3'
miRNA:   3'- -GGGCACAUUUUUGGCCUGCCACCGUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.