miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
251 3' -55.4 AC_000008.1 + 9739 0.66 0.593109
Target:  5'- -gUgGCGGGCGGcagcgGGCGGCG-GUCg- -3'
miRNA:   3'- gaAgUGCCUGUCa----CCGUCGCaCAGgg -5'
251 3' -55.4 AC_000008.1 + 11937 0.67 0.537521
Target:  5'- --gCGCGGACgcGGU-GCGGCGcgacGUCCCc -3'
miRNA:   3'- gaaGUGCCUG--UCAcCGUCGCa---CAGGG- -5'
251 3' -55.4 AC_000008.1 + 32078 0.67 0.537521
Target:  5'- --cCGCGGGCGGUGGCugcAGCGg--CUg -3'
miRNA:   3'- gaaGUGCCUGUCACCG---UCGCacaGGg -5'
251 3' -55.4 AC_000008.1 + 18360 0.67 0.525515
Target:  5'- --gCACGGGCuggcgacggcgacGGcGGCGGCGgGUUCCa -3'
miRNA:   3'- gaaGUGCCUG-------------UCaCCGUCGCaCAGGG- -5'
251 3' -55.4 AC_000008.1 + 9121 0.68 0.49438
Target:  5'- -----aGGGUGGUGGCGGUGUGUUCUg -3'
miRNA:   3'- gaagugCCUGUCACCGUCGCACAGGG- -5'
251 3' -55.4 AC_000008.1 + 7698 0.68 0.44985
Target:  5'- -gUCACGGGCcauuagcauuugcaGGUGGUcGCGaaagGUCCUa -3'
miRNA:   3'- gaAGUGCCUG--------------UCACCGuCGCa---CAGGG- -5'
251 3' -55.4 AC_000008.1 + 14200 0.69 0.423046
Target:  5'- --gCGCGGcgcCAGUGGCGGCGgcgcuggGUUCUc -3'
miRNA:   3'- gaaGUGCCu--GUCACCGUCGCa------CAGGG- -5'
251 3' -55.4 AC_000008.1 + 7996 0.7 0.384237
Target:  5'- -gUCGCGGGCAaagcacuuGUGGCGGCGacaguggaccaggUGUUUCa -3'
miRNA:   3'- gaAGUGCCUGU--------CACCGUCGC-------------ACAGGG- -5'
251 3' -55.4 AC_000008.1 + 8535 0.7 0.36707
Target:  5'- ---gGCGGGCGGUgGGCcgcgGGgGUGUCCUu -3'
miRNA:   3'- gaagUGCCUGUCA-CCG----UCgCACAGGG- -5'
251 3' -55.4 AC_000008.1 + 8128 0.72 0.278352
Target:  5'- -aUC-CGGAUAGUGGCcGgGagGUCCCg -3'
miRNA:   3'- gaAGuGCCUGUCACCGuCgCa-CAGGG- -5'
251 3' -55.4 AC_000008.1 + 22811 0.74 0.209854
Target:  5'- -cUCGCGGuACAGUGuCAGCaagugaccuagguauGUGUCCCg -3'
miRNA:   3'- gaAGUGCC-UGUCACcGUCG---------------CACAGGG- -5'
251 3' -55.4 AC_000008.1 + 13026 1.13 0.000315
Target:  5'- cCUUCACGGACAGUGGCAGCGUGUCCCg -3'
miRNA:   3'- -GAAGUGCCUGUCACCGUCGCACAGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.