miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2510 5' -64.5 NC_001454.1 + 14714 0.66 0.210953
Target:  5'- gGGGCaGGUCcGACGGCGGGCgucagUGAUg -3'
miRNA:   3'- gCCCG-CCGGaCUGCUGCCCGg----GCUGg -5'
2510 5' -64.5 NC_001454.1 + 11487 0.66 0.205643
Target:  5'- uCGGGCGugacacCCUcaGACGACuGGGCggCGGCCa -3'
miRNA:   3'- -GCCCGCc-----GGA--CUGCUG-CCCGg-GCUGG- -5'
2510 5' -64.5 NC_001454.1 + 11287 0.66 0.204595
Target:  5'- gGGGCGGaCCUGcaauggcagcccaGCGccCGGGCCCuggaggcGGCUg -3'
miRNA:   3'- gCCCGCC-GGAC-------------UGCu-GCCCGGG-------CUGG- -5'
2510 5' -64.5 NC_001454.1 + 12623 0.67 0.200448
Target:  5'- aCGGGCGaGUUUGACGugccugaGGGCgaCGACg -3'
miRNA:   3'- -GCCCGC-CGGACUGCug-----CCCGg-GCUGg -5'
2510 5' -64.5 NC_001454.1 + 17483 0.68 0.17163
Target:  5'- aGGGCGGCg-GGCGGgGGuaGCCaCGGCa -3'
miRNA:   3'- gCCCGCCGgaCUGCUgCC--CGG-GCUGg -5'
2510 5' -64.5 NC_001454.1 + 15843 0.68 0.150501
Target:  5'- gCGGGCuucaGGCUUGGCGugGGGUugcuUUGGuCCa -3'
miRNA:   3'- -GCCCG----CCGGACUGCugCCCG----GGCU-GG- -5'
2510 5' -64.5 NC_001454.1 + 19111 0.69 0.13533
Target:  5'- aGGGCG--CUGGgGACGGcaaCCCGACCg -3'
miRNA:   3'- gCCCGCcgGACUgCUGCCc--GGGCUGG- -5'
2510 5' -64.5 NC_001454.1 + 8933 0.7 0.118347
Target:  5'- aCGGGuuGUCgucGACGACGGcGCCgGACg -3'
miRNA:   3'- -GCCCgcCGGa--CUGCUGCC-CGGgCUGg -5'
2510 5' -64.5 NC_001454.1 + 15219 1.11 0.000066
Target:  5'- aCGGGCGGCCUGACGACGGGCCCGACCu -3'
miRNA:   3'- -GCCCGCCGGACUGCUGCCCGGGCUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.