miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25104 3' -55.5 NC_005336.1 + 107313 0.66 0.913145
Target:  5'- aGGCGCGGUUU-UGAguUCGUaGAGCACGc -3'
miRNA:   3'- -CUGCGCCAGAcACU--GGUA-CUCGUGCa -5'
25104 3' -55.5 NC_005336.1 + 118546 0.66 0.913145
Target:  5'- -cUGCGGaaaggCgGUGACCAgguagugGAGCGCGa -3'
miRNA:   3'- cuGCGCCa----GaCACUGGUa------CUCGUGCa -5'
25104 3' -55.5 NC_005336.1 + 20460 0.66 0.907047
Target:  5'- cGAUGUccggaGGUCc--GGCCAUGAGCugGUc -3'
miRNA:   3'- -CUGCG-----CCAGacaCUGGUACUCGugCA- -5'
25104 3' -55.5 NC_005336.1 + 32597 0.66 0.907047
Target:  5'- uACGCGuGUCUGcagagGugCggGAGCAUGg -3'
miRNA:   3'- cUGCGC-CAGACa----CugGuaCUCGUGCa -5'
25104 3' -55.5 NC_005336.1 + 69205 0.66 0.900709
Target:  5'- cGCGCGGUCgccgGUGAggaacucgcCCGUGgccagguccAGCACGc -3'
miRNA:   3'- cUGCGCCAGa---CACU---------GGUAC---------UCGUGCa -5'
25104 3' -55.5 NC_005336.1 + 92617 0.66 0.900709
Target:  5'- cACGCGGUCgGUGAa---GAGCAUGc -3'
miRNA:   3'- cUGCGCCAGaCACUgguaCUCGUGCa -5'
25104 3' -55.5 NC_005336.1 + 117214 0.66 0.894132
Target:  5'- cGACGCGG-CgcagGUG-CCG-GAGCAUGg -3'
miRNA:   3'- -CUGCGCCaGa---CACuGGUaCUCGUGCa -5'
25104 3' -55.5 NC_005336.1 + 61984 0.66 0.887321
Target:  5'- cGGCGCGcGUCcGcGGCCAUGgcguccacgaaGGCGCGg -3'
miRNA:   3'- -CUGCGC-CAGaCaCUGGUAC-----------UCGUGCa -5'
25104 3' -55.5 NC_005336.1 + 14377 0.66 0.887321
Target:  5'- cGGCGCGGUCgcggGGCaGUGgcGGCGCGa -3'
miRNA:   3'- -CUGCGCCAGaca-CUGgUAC--UCGUGCa -5'
25104 3' -55.5 NC_005336.1 + 66047 0.66 0.887321
Target:  5'- -uCGauGUCgGUGGCCAUGAGCcCGc -3'
miRNA:   3'- cuGCgcCAGaCACUGGUACUCGuGCa -5'
25104 3' -55.5 NC_005336.1 + 36420 0.66 0.887321
Target:  5'- cGCGgGGUUcagUGaGGCCAcGAGCGCGUu -3'
miRNA:   3'- cUGCgCCAG---ACaCUGGUaCUCGUGCA- -5'
25104 3' -55.5 NC_005336.1 + 67887 0.66 0.887321
Target:  5'- cGACGCGGUCca-GGCU--GGGCGCGa -3'
miRNA:   3'- -CUGCGCCAGacaCUGGuaCUCGUGCa -5'
25104 3' -55.5 NC_005336.1 + 24833 0.67 0.880279
Target:  5'- gGGCGCGGga---GACCAUGAGCuucCGg -3'
miRNA:   3'- -CUGCGCCagacaCUGGUACUCGu--GCa -5'
25104 3' -55.5 NC_005336.1 + 48779 0.67 0.880279
Target:  5'- -cCGCGcGUCaUGggccagaaGACCGUGGGCGCGc -3'
miRNA:   3'- cuGCGC-CAG-ACa-------CUGGUACUCGUGCa -5'
25104 3' -55.5 NC_005336.1 + 88920 0.67 0.880279
Target:  5'- aGGCGCGGacUCUGUGGCCGaG-GCcuucgACGUc -3'
miRNA:   3'- -CUGCGCC--AGACACUGGUaCuCG-----UGCA- -5'
25104 3' -55.5 NC_005336.1 + 101624 0.67 0.880279
Target:  5'- cGCGCGGcccUCgucGUcGACCAUGcGCGCGg -3'
miRNA:   3'- cUGCGCC---AGa--CA-CUGGUACuCGUGCa -5'
25104 3' -55.5 NC_005336.1 + 115202 0.67 0.872272
Target:  5'- uACGgGGUaacuacacguagaCUGUGugCGUGcGCGCGUg -3'
miRNA:   3'- cUGCgCCA-------------GACACugGUACuCGUGCA- -5'
25104 3' -55.5 NC_005336.1 + 44488 0.67 0.865521
Target:  5'- cGACuGCGG-Caa-GGCCGUGGGCGCGg -3'
miRNA:   3'- -CUG-CGCCaGacaCUGGUACUCGUGCa -5'
25104 3' -55.5 NC_005336.1 + 103863 0.67 0.865521
Target:  5'- cACGUGGUCUGcGACgaCGUGGGCAg-- -3'
miRNA:   3'- cUGCGCCAGACaCUG--GUACUCGUgca -5'
25104 3' -55.5 NC_005336.1 + 45027 0.67 0.857817
Target:  5'- cGACGCGGcCUucGAgcUCGUGGGCACGc -3'
miRNA:   3'- -CUGCGCCaGAcaCU--GGUACUCGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.