miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25104 5' -60.1 NC_005336.1 + 63845 0.66 0.74785
Target:  5'- uGGAgCGCaaGUCCGGCG-CCGCGGuCUUc -3'
miRNA:   3'- -CCU-GCGg-CGGGCCGCuGGUGCUuGAA- -5'
25104 5' -60.1 NC_005336.1 + 63480 0.66 0.74785
Target:  5'- cGGGCGCCagcgGCCCGcGCG--CACGGugUa -3'
miRNA:   3'- -CCUGCGG----CGGGC-CGCugGUGCUugAa -5'
25104 5' -60.1 NC_005336.1 + 44782 0.66 0.74785
Target:  5'- aGGACcCCGUCCcGCGAaCCGCGcGCg- -3'
miRNA:   3'- -CCUGcGGCGGGcCGCU-GGUGCuUGaa -5'
25104 5' -60.1 NC_005336.1 + 83420 0.66 0.74785
Target:  5'- gGGACauGCCcgcauugucguaGCCCGG-GACCAgguCGAACUUu -3'
miRNA:   3'- -CCUG--CGG------------CGGGCCgCUGGU---GCUUGAA- -5'
25104 5' -60.1 NC_005336.1 + 129792 0.66 0.74785
Target:  5'- -aACGCCGgccccguguucUCCGGCGACUGCGcgaAGCUg -3'
miRNA:   3'- ccUGCGGC-----------GGGCCGCUGGUGC---UUGAa -5'
25104 5' -60.1 NC_005336.1 + 121229 0.66 0.74785
Target:  5'- aGGCaCCGCUCGGCGgACCgacaccaaucgGCGGACa- -3'
miRNA:   3'- cCUGcGGCGGGCCGC-UGG-----------UGCUUGaa -5'
25104 5' -60.1 NC_005336.1 + 110553 0.66 0.74785
Target:  5'- cGugGCgCGCaCGGCGAagGCGAGCa- -3'
miRNA:   3'- cCugCG-GCGgGCCGCUggUGCUUGaa -5'
25104 5' -60.1 NC_005336.1 + 131909 0.66 0.74785
Target:  5'- uGGACGCCggGCCCaGCGAggccUCGCG-GCUc -3'
miRNA:   3'- -CCUGCGG--CGGGcCGCU----GGUGCuUGAa -5'
25104 5' -60.1 NC_005336.1 + 36287 0.66 0.74785
Target:  5'- cGGcCGCgugcgCGCCCGGCGGCgGCGc---- -3'
miRNA:   3'- -CCuGCG-----GCGGGCCGCUGgUGCuugaa -5'
25104 5' -60.1 NC_005336.1 + 73363 0.66 0.74785
Target:  5'- aGGACGCCGCgCUcGUGGCCGCc----- -3'
miRNA:   3'- -CCUGCGGCG-GGcCGCUGGUGcuugaa -5'
25104 5' -60.1 NC_005336.1 + 123170 0.66 0.74785
Target:  5'- aGGGCGgCGCCuCGcGCGugUugGAGg-- -3'
miRNA:   3'- -CCUGCgGCGG-GC-CGCugGugCUUgaa -5'
25104 5' -60.1 NC_005336.1 + 20594 0.66 0.74785
Target:  5'- aGGACGCCuCCgaaGGCGACgGCaaGGGCg- -3'
miRNA:   3'- -CCUGCGGcGGg--CCGCUGgUG--CUUGaa -5'
25104 5' -60.1 NC_005336.1 + 95850 0.66 0.74785
Target:  5'- uGGGCGgCGCCgaGGCG-CCuaucuCGAACa- -3'
miRNA:   3'- -CCUGCgGCGGg-CCGCuGGu----GCUUGaa -5'
25104 5' -60.1 NC_005336.1 + 86122 0.66 0.738383
Target:  5'- -cACGCagaGCCCGGUG-CCGCG-GCUc -3'
miRNA:   3'- ccUGCGg--CGGGCCGCuGGUGCuUGAa -5'
25104 5' -60.1 NC_005336.1 + 124641 0.66 0.738383
Target:  5'- uGGCGCCugaaCCCGcCGACCGCGGcugcGCUg -3'
miRNA:   3'- cCUGCGGc---GGGCcGCUGGUGCU----UGAa -5'
25104 5' -60.1 NC_005336.1 + 124181 0.66 0.738383
Target:  5'- cGGCGCgCGUgCGGUcgcGACaCGCGGACUUc -3'
miRNA:   3'- cCUGCG-GCGgGCCG---CUG-GUGCUUGAA- -5'
25104 5' -60.1 NC_005336.1 + 132435 0.66 0.738383
Target:  5'- -cGCGCCGgCgGGCGACCuCGcACg- -3'
miRNA:   3'- ccUGCGGCgGgCCGCUGGuGCuUGaa -5'
25104 5' -60.1 NC_005336.1 + 75112 0.66 0.738383
Target:  5'- -cGCGuCCGCCgGGCGcGCCACcAGCg- -3'
miRNA:   3'- ccUGC-GGCGGgCCGC-UGGUGcUUGaa -5'
25104 5' -60.1 NC_005336.1 + 26344 0.66 0.738383
Target:  5'- uGACGCgguCGCCgGGCGcgcgcGCCGCGGAg-- -3'
miRNA:   3'- cCUGCG---GCGGgCCGC-----UGGUGCUUgaa -5'
25104 5' -60.1 NC_005336.1 + 90671 0.66 0.738383
Target:  5'- aGGGCGagaCCGCgacggcggugugCCGGCGGCUGcCGAGCg- -3'
miRNA:   3'- -CCUGC---GGCG------------GGCCGCUGGU-GCUUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.