miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2511 3' -55.8 NC_001454.1 + 16756 0.66 0.567908
Target:  5'- gCUCCGCgGCAcgGCUcGCGGccguuuaUGGGCa -3'
miRNA:   3'- gGAGGUGgCGUcaCGAuUGCC-------ACCUG- -5'
2511 3' -55.8 NC_001454.1 + 14457 0.66 0.524837
Target:  5'- aUUCCACCcccacuacaggGUAGuUGCUGACuugcGUGGACg -3'
miRNA:   3'- gGAGGUGG-----------CGUC-ACGAUUGc---CACCUG- -5'
2511 3' -55.8 NC_001454.1 + 16051 0.67 0.482015
Target:  5'- uCgUCCACCGUua-GCacuGCGGUGGAg -3'
miRNA:   3'- -GgAGGUGGCGucaCGau-UGCCACCUg -5'
2511 3' -55.8 NC_001454.1 + 8894 0.68 0.421184
Target:  5'- uCCUCCACaGCGGgacccucgggGCUGAcCGGcgcugGGACg -3'
miRNA:   3'- -GGAGGUGgCGUCa---------CGAUU-GCCa----CCUG- -5'
2511 3' -55.8 NC_001454.1 + 7770 0.69 0.365219
Target:  5'- uUCUgCACCuGCAcgcucuUGCUGugGGUGGAUg -3'
miRNA:   3'- -GGAgGUGG-CGUc-----ACGAUugCCACCUG- -5'
2511 3' -55.8 NC_001454.1 + 20381 0.77 0.107366
Target:  5'- gCCUCgaugaCGCCGCGGUGCggcUGGUGGAUg -3'
miRNA:   3'- -GGAG-----GUGGCGUCACGauuGCCACCUG- -5'
2511 3' -55.8 NC_001454.1 + 16113 1.12 0.000297
Target:  5'- gCCUCCACCGCAGUGCUAACGGUGGACg -3'
miRNA:   3'- -GGAGGUGGCGUCACGAUUGCCACCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.