miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25114 5' -52.5 NC_005336.1 + 89274 0.66 0.982755
Target:  5'- gUCCCGGUucugccgacugAcgGCGGG--CCCuAGCCCg -3'
miRNA:   3'- -AGGGUCA-----------UuaCGCUCuaGGGcUUGGG- -5'
25114 5' -52.5 NC_005336.1 + 67067 0.66 0.982755
Target:  5'- gCCaCGGUGAUgcgcaaccugcGCGAGcUCaCCGcGCCCg -3'
miRNA:   3'- aGG-GUCAUUA-----------CGCUCuAG-GGCuUGGG- -5'
25114 5' -52.5 NC_005336.1 + 119375 0.66 0.982555
Target:  5'- cUUCCAGc---GCGAGAUCCgcgugggcgugggCGAGCUCu -3'
miRNA:   3'- -AGGGUCauuaCGCUCUAGG-------------GCUUGGG- -5'
25114 5' -52.5 NC_005336.1 + 7358 0.66 0.980677
Target:  5'- gCCgCGGgcGUGCGAGGUCgCCc-GCCg -3'
miRNA:   3'- aGG-GUCauUACGCUCUAG-GGcuUGGg -5'
25114 5' -52.5 NC_005336.1 + 96773 0.66 0.980677
Target:  5'- gUUCAGU-AUGCGAGGUcaCCCGGcgcauGCUCg -3'
miRNA:   3'- aGGGUCAuUACGCUCUA--GGGCU-----UGGG- -5'
25114 5' -52.5 NC_005336.1 + 51726 0.66 0.978417
Target:  5'- uUCCCGG-GGUGCGAGAgccUUuuGuACCg -3'
miRNA:   3'- -AGGGUCaUUACGCUCU---AGggCuUGGg -5'
25114 5' -52.5 NC_005336.1 + 6443 0.66 0.977702
Target:  5'- gCCCAGcGccgccgccgccuccgGCGAGAucgagUCCgCGGACCCg -3'
miRNA:   3'- aGGGUCaUua-------------CGCUCU-----AGG-GCUUGGG- -5'
25114 5' -52.5 NC_005336.1 + 112840 0.66 0.975968
Target:  5'- --aCGGc---GCGAGAUCCCGGucugccuggACCCg -3'
miRNA:   3'- aggGUCauuaCGCUCUAGGGCU---------UGGG- -5'
25114 5' -52.5 NC_005336.1 + 67540 0.66 0.975968
Target:  5'- -aCCAGg---GCGucGAUUCCGcGCCCg -3'
miRNA:   3'- agGGUCauuaCGCu-CUAGGGCuUGGG- -5'
25114 5' -52.5 NC_005336.1 + 2962 0.66 0.975195
Target:  5'- cUCCgAGUGAgUGCGuGAgucaacgguaccugUCCCuuACCCa -3'
miRNA:   3'- -AGGgUCAUU-ACGCuCU--------------AGGGcuUGGG- -5'
25114 5' -52.5 NC_005336.1 + 2962 0.66 0.975195
Target:  5'- cUCCgAGUGAgUGCGuGAgucaacgguaccugUCCCuuACCCa -3'
miRNA:   3'- -AGGgUCAUU-ACGCuCU--------------AGGGcuUGGG- -5'
25114 5' -52.5 NC_005336.1 + 96002 0.66 0.973321
Target:  5'- cUCgCCAGcucugGCGAGAggaagcgCCCGcacuGCCCg -3'
miRNA:   3'- -AG-GGUCauua-CGCUCUa------GGGCu---UGGG- -5'
25114 5' -52.5 NC_005336.1 + 88549 0.67 0.970469
Target:  5'- -aCUGGUAGUccGCGAGcUCCUugucgGAGCCCa -3'
miRNA:   3'- agGGUCAUUA--CGCUCuAGGG-----CUUGGG- -5'
25114 5' -52.5 NC_005336.1 + 79618 0.67 0.970469
Target:  5'- cUCCCGGUGGa--GAGGUCgUUGAGCUCg -3'
miRNA:   3'- -AGGGUCAUUacgCUCUAG-GGCUUGGG- -5'
25114 5' -52.5 NC_005336.1 + 56261 0.67 0.967405
Target:  5'- cUCCCAGcacacUGCGAGAUCgcguggacaauaCCGGcACCUc -3'
miRNA:   3'- -AGGGUCauu--ACGCUCUAG------------GGCU-UGGG- -5'
25114 5' -52.5 NC_005336.1 + 85395 0.67 0.967405
Target:  5'- gCCCAGgc--GCGGGuccuUCaCCGuGCCCa -3'
miRNA:   3'- aGGGUCauuaCGCUCu---AG-GGCuUGGG- -5'
25114 5' -52.5 NC_005336.1 + 7124 0.67 0.964123
Target:  5'- gCCCAGgucuGUGCGAaGUCCaccugCGAAgCCa -3'
miRNA:   3'- aGGGUCau--UACGCUcUAGG-----GCUUgGG- -5'
25114 5' -52.5 NC_005336.1 + 50851 0.67 0.960617
Target:  5'- aCCUGGgccucgGCGAgGAUCCCGuGACCa -3'
miRNA:   3'- aGGGUCauua--CGCU-CUAGGGC-UUGGg -5'
25114 5' -52.5 NC_005336.1 + 15537 0.67 0.960617
Target:  5'- gUCCAGca--GCGAGGUgCCGGgcaGCCCc -3'
miRNA:   3'- aGGGUCauuaCGCUCUAgGGCU---UGGG- -5'
25114 5' -52.5 NC_005336.1 + 43526 0.67 0.95688
Target:  5'- gCCCGGUGuacGCGGGcgCCaagucggaGGACCUg -3'
miRNA:   3'- aGGGUCAUua-CGCUCuaGGg-------CUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.