miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25121 3' -60.9 NC_005336.1 + 50502 0.66 0.74458
Target:  5'- uGGggGCGCCGCGcccgcGGCGgaaggccUGUCGggacGCGCCg -3'
miRNA:   3'- -CCa-CGUGGUGC-----CCGCa------GCAGC----CGCGG- -5'
25121 3' -60.9 NC_005336.1 + 101346 0.66 0.74458
Target:  5'- --aGCACCACgGGGCGgCGgccgauccaGGCGgCg -3'
miRNA:   3'- ccaCGUGGUG-CCCGCaGCag-------CCGCgG- -5'
25121 3' -60.9 NC_005336.1 + 55580 0.66 0.74458
Target:  5'- -cUGCcCCGCGGuGCcaggauccaGUCGGUGCCu -3'
miRNA:   3'- ccACGuGGUGCC-CGcag------CAGCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 22428 0.66 0.74179
Target:  5'- uGGUGCuggACCGCgGGGCGcUCacgCGGCucucggacguccccGCCg -3'
miRNA:   3'- -CCACG---UGGUG-CCCGC-AGca-GCCG--------------CGG- -5'
25121 3' -60.9 NC_005336.1 + 80956 0.66 0.738992
Target:  5'- aGGUGCGCgcagcgcgcaggcugCGCaGGGCG-CGcUCGcGCGCg -3'
miRNA:   3'- -CCACGUG---------------GUG-CCCGCaGC-AGC-CGCGg -5'
25121 3' -60.9 NC_005336.1 + 99476 0.66 0.738992
Target:  5'- --gGCACUGCGGuaugucucgcgcugcGCGg-GUCGGCGCg -3'
miRNA:   3'- ccaCGUGGUGCC---------------CGCagCAGCCGCGg -5'
25121 3' -60.9 NC_005336.1 + 135745 0.66 0.73525
Target:  5'- uGGaGCACUugGuccGCG-CG-CGGCGCCc -3'
miRNA:   3'- -CCaCGUGGugCc--CGCaGCaGCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 16557 0.66 0.73525
Target:  5'- -cUGCACgagCGCGGGC-UCGUCcaggaacaccacGGCGCg -3'
miRNA:   3'- ccACGUG---GUGCCCGcAGCAG------------CCGCGg -5'
25121 3' -60.9 NC_005336.1 + 124755 0.66 0.73525
Target:  5'- aGGcGCACUucGCGcGGCGccCGgggCGcGCGCCg -3'
miRNA:   3'- -CCaCGUGG--UGC-CCGCa-GCa--GC-CGCGG- -5'
25121 3' -60.9 NC_005336.1 + 108824 0.66 0.73525
Target:  5'- uGGUG-ACCugGGGCG-CGcCGuCGCa -3'
miRNA:   3'- -CCACgUGGugCCCGCaGCaGCcGCGg -5'
25121 3' -60.9 NC_005336.1 + 92144 0.66 0.734312
Target:  5'- cGGcGCACuCGCGGaagagcaGCG-CGUCGcacGCGCCc -3'
miRNA:   3'- -CCaCGUG-GUGCC-------CGCaGCAGC---CGCGG- -5'
25121 3' -60.9 NC_005336.1 + 42145 0.66 0.734312
Target:  5'- --gGCGCCGCGGcGCGcggccUCGcugugccacggcuUCGGCGUg -3'
miRNA:   3'- ccaCGUGGUGCC-CGC-----AGC-------------AGCCGCGg -5'
25121 3' -60.9 NC_005336.1 + 102849 0.66 0.725837
Target:  5'- cGUGUacACCuACGGGCGcuacuUCGa-GGCGCUg -3'
miRNA:   3'- cCACG--UGG-UGCCCGC-----AGCagCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 102604 0.66 0.725837
Target:  5'- cGUGC-CCGCGGGCG-CGgacgUGGC-Cg -3'
miRNA:   3'- cCACGuGGUGCCCGCaGCa---GCCGcGg -5'
25121 3' -60.9 NC_005336.1 + 82036 0.66 0.725837
Target:  5'- cGUG-AUCACGGGCG-CG-CGGuCGCg -3'
miRNA:   3'- cCACgUGGUGCCCGCaGCaGCC-GCGg -5'
25121 3' -60.9 NC_005336.1 + 135858 0.66 0.725837
Target:  5'- -cUGCugCGCGcGGCGcugCGccgCGGCgGCCc -3'
miRNA:   3'- ccACGugGUGC-CCGCa--GCa--GCCG-CGG- -5'
25121 3' -60.9 NC_005336.1 + 73025 0.66 0.725837
Target:  5'- -uUGCcgaaguCCACGGccagcaccuuGCGUCGcUCGGCGUUg -3'
miRNA:   3'- ccACGu-----GGUGCC----------CGCAGC-AGCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 70776 0.66 0.725837
Target:  5'- --cGCGCCAUGuccaGCG-CGcucugCGGCGCCa -3'
miRNA:   3'- ccaCGUGGUGCc---CGCaGCa----GCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 115813 0.66 0.725837
Target:  5'- --cGUagaGCCGCGGuGCG-CGcuggCGGUGCCg -3'
miRNA:   3'- ccaCG---UGGUGCC-CGCaGCa---GCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 75510 0.66 0.725837
Target:  5'- cGGUGUuguCGCaGGCGUUGaaGGCGUCc -3'
miRNA:   3'- -CCACGug-GUGcCCGCAGCagCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.