miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25121 3' -60.9 NC_005336.1 + 88373 1.13 0.000571
Target:  5'- aGGUGCACCACGGGCGUCGUCGGCGCCg -3'
miRNA:   3'- -CCACGUGGUGCCCGCAGCAGCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 59354 0.84 0.06505
Target:  5'- --cGCGCCGCGGGCGUCGgccUGcGCGCCg -3'
miRNA:   3'- ccaCGUGGUGCCCGCAGCa--GC-CGCGG- -5'
25121 3' -60.9 NC_005336.1 + 93004 0.82 0.090716
Target:  5'- cGGUGCGCCACGGGC-UCGUUGuCGCa -3'
miRNA:   3'- -CCACGUGGUGCCCGcAGCAGCcGCGg -5'
25121 3' -60.9 NC_005336.1 + 124681 0.79 0.149571
Target:  5'- cGGUGCugCGgccCGcGGCGUCGgcgGGCGCCg -3'
miRNA:   3'- -CCACGugGU---GC-CCGCAGCag-CCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 15007 0.78 0.173118
Target:  5'- cGGgcucGCGCggcgCGCGGGCGgCGUCGGCGCg -3'
miRNA:   3'- -CCa---CGUG----GUGCCCGCaGCAGCCGCGg -5'
25121 3' -60.9 NC_005336.1 + 40605 0.78 0.173118
Target:  5'- --cGCACCuccuCGGGCGgcUCGaccUCGGCGCCg -3'
miRNA:   3'- ccaCGUGGu---GCCCGC--AGC---AGCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 15013 0.78 0.173118
Target:  5'- --cGCGCggcgCGCGGGCGgCGUCGGCGCg -3'
miRNA:   3'- ccaCGUG----GUGCCCGCaGCAGCCGCGg -5'
25121 3' -60.9 NC_005336.1 + 78161 0.77 0.195212
Target:  5'- cGGcGCGCgCGCGGGCGUgGU-GGUGCCc -3'
miRNA:   3'- -CCaCGUG-GUGCCCGCAgCAgCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 5889 0.77 0.197082
Target:  5'- --gGCGCCGCGGGCGUgggcucaggauagugCGgCGGCGUCg -3'
miRNA:   3'- ccaCGUGGUGCCCGCA---------------GCaGCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 19764 0.76 0.214627
Target:  5'- cGGUGcCGCC-CGcGGCGaCGgCGGCGCCg -3'
miRNA:   3'- -CCAC-GUGGuGC-CCGCaGCaGCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 20307 0.76 0.224416
Target:  5'- cGGUGUccaucucGCUgACGGGUG-CGUCGGCGUCg -3'
miRNA:   3'- -CCACG-------UGG-UGCCCGCaGCAGCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 83778 0.76 0.230255
Target:  5'- cGGUGaCGCgGCGGGCGccuugaUCGUCGGgcagcuggaCGCCg -3'
miRNA:   3'- -CCAC-GUGgUGCCCGC------AGCAGCC---------GCGG- -5'
25121 3' -60.9 NC_005336.1 + 114311 0.76 0.235674
Target:  5'- uGUGCGgCACGcGGCuGUCGcuggcggCGGCGCCg -3'
miRNA:   3'- cCACGUgGUGC-CCG-CAGCa------GCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 16215 0.75 0.2412
Target:  5'- --aGCAcguCCGCGGGCGugagcccguguUCGUCGaGCGCCu -3'
miRNA:   3'- ccaCGU---GGUGCCCGC-----------AGCAGC-CGCGG- -5'
25121 3' -60.9 NC_005336.1 + 81392 0.75 0.2412
Target:  5'- cGUGCACUGCGuggccGGCGUCaaccgcagCGGCGCCg -3'
miRNA:   3'- cCACGUGGUGC-----CCGCAGca------GCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 6605 0.75 0.246833
Target:  5'- -aUGCGuCCACGGcGCGUgCGUCuGCGCCc -3'
miRNA:   3'- ccACGU-GGUGCC-CGCA-GCAGcCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 133444 0.75 0.257836
Target:  5'- -cUGCACCGCGcGGCGgUGUucagccaCGGCGCCu -3'
miRNA:   3'- ccACGUGGUGC-CCGCaGCA-------GCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 95831 0.75 0.258426
Target:  5'- --cGCGCCAUGgcGGCGUCcgugggCGGCGCCg -3'
miRNA:   3'- ccaCGUGGUGC--CCGCAGca----GCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 27539 0.75 0.258426
Target:  5'- aGGUaCACgAC-GGCGUUGUCGGCGCg -3'
miRNA:   3'- -CCAcGUGgUGcCCGCAGCAGCCGCGg -5'
25121 3' -60.9 NC_005336.1 + 90861 0.75 0.27046
Target:  5'- aGUGCACCACGGGCuUC-UUGGCGa- -3'
miRNA:   3'- cCACGUGGUGCCCGcAGcAGCCGCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.