miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25121 3' -60.9 NC_005336.1 + 457 0.67 0.638747
Target:  5'- --cGUGCCGCGGGCGgccgcgCGUCcGCGaCg -3'
miRNA:   3'- ccaCGUGGUGCCCGCa-----GCAGcCGCgG- -5'
25121 3' -60.9 NC_005336.1 + 457 0.67 0.638747
Target:  5'- --cGUGCCGCGGGCGgccgcgCGUCcGCGaCg -3'
miRNA:   3'- ccaCGUGGUGCCCGCa-----GCAGcCGCgG- -5'
25121 3' -60.9 NC_005336.1 + 3516 0.68 0.580116
Target:  5'- cGGcgGCGCCGCgGGGCGgaagaGcGCGCCg -3'
miRNA:   3'- -CCa-CGUGGUG-CCCGCagcagC-CGCGG- -5'
25121 3' -60.9 NC_005336.1 + 3516 0.68 0.580116
Target:  5'- cGGcgGCGCCGCgGGGCGgaagaGcGCGCCg -3'
miRNA:   3'- -CCa-CGUGGUG-CCCGCagcagC-CGCGG- -5'
25121 3' -60.9 NC_005336.1 + 3730 0.7 0.494794
Target:  5'- cGGgGCGCgGCGGGCG-CGgugagggaagcCGGCGCg -3'
miRNA:   3'- -CCaCGUGgUGCCCGCaGCa----------GCCGCGg -5'
25121 3' -60.9 NC_005336.1 + 3730 0.7 0.494794
Target:  5'- cGGgGCGCgGCGGGCG-CGgugagggaagcCGGCGCg -3'
miRNA:   3'- -CCaCGUGgUGCCCGCaGCa----------GCCGCGg -5'
25121 3' -60.9 NC_005336.1 + 3861 0.69 0.522692
Target:  5'- --aGCGCC-CGcGCG-CGUCGcGCGCCg -3'
miRNA:   3'- ccaCGUGGuGCcCGCaGCAGC-CGCGG- -5'
25121 3' -60.9 NC_005336.1 + 3861 0.69 0.522692
Target:  5'- --aGCGCC-CGcGCG-CGUCGcGCGCCg -3'
miRNA:   3'- ccaCGUGGuGCcCGCaGCAGC-CGCGG- -5'
25121 3' -60.9 NC_005336.1 + 5502 0.67 0.648542
Target:  5'- --aGCGCCACGcGCa--GUCGGCgGCCu -3'
miRNA:   3'- ccaCGUGGUGCcCGcagCAGCCG-CGG- -5'
25121 3' -60.9 NC_005336.1 + 5676 0.66 0.697188
Target:  5'- gGGaGCGCCGCcaGCGUCucugCGaGCGCCg -3'
miRNA:   3'- -CCaCGUGGUGccCGCAGca--GC-CGCGG- -5'
25121 3' -60.9 NC_005336.1 + 5821 0.66 0.706798
Target:  5'- aGGccgGCGCCGCGcGCG-CGgccagcCGGCGCa -3'
miRNA:   3'- -CCa--CGUGGUGCcCGCaGCa-----GCCGCGg -5'
25121 3' -60.9 NC_005336.1 + 5889 0.77 0.197082
Target:  5'- --gGCGCCGCGGGCGUgggcucaggauagugCGgCGGCGUCg -3'
miRNA:   3'- ccaCGUGGUGCCCGCA---------------GCaGCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 6570 0.67 0.638747
Target:  5'- cGUGCG-CGCGaGGUGgugcagUGUCGuGCGCCu -3'
miRNA:   3'- cCACGUgGUGC-CCGCa-----GCAGC-CGCGG- -5'
25121 3' -60.9 NC_005336.1 + 6605 0.75 0.246833
Target:  5'- -aUGCGuCCACGGcGCGUgCGUCuGCGCCc -3'
miRNA:   3'- ccACGU-GGUGCC-CGCA-GCAGcCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 7003 0.67 0.648542
Target:  5'- cGUGCugCACGuaGGCGUgcagCGGCGUg -3'
miRNA:   3'- cCACGugGUGC--CCGCAgca-GCCGCGg -5'
25121 3' -60.9 NC_005336.1 + 7354 0.72 0.375147
Target:  5'- --gGCAgCCGCGGGCGUgcgaggucgccCGcCGGCGCg -3'
miRNA:   3'- ccaCGU-GGUGCCCGCA-----------GCaGCCGCGg -5'
25121 3' -60.9 NC_005336.1 + 7946 0.66 0.725837
Target:  5'- -cUGCGCU-CGGGUGU-GUCGacaacGCGCCg -3'
miRNA:   3'- ccACGUGGuGCCCGCAgCAGC-----CGCGG- -5'
25121 3' -60.9 NC_005336.1 + 8535 0.66 0.713492
Target:  5'- --aGCGCCguGCGGcGCacgccgcccggcauGUucaCGUCGGCGCCc -3'
miRNA:   3'- ccaCGUGG--UGCC-CG--------------CA---GCAGCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 9018 0.67 0.638747
Target:  5'- cGGcgGCGuCCAUGgcguGGCGUUGgCGGCGCg -3'
miRNA:   3'- -CCa-CGU-GGUGC----CCGCAGCaGCCGCGg -5'
25121 3' -60.9 NC_005336.1 + 10138 0.67 0.677825
Target:  5'- cGUGCggucgACCACGcuggcGGCGUucaCGUCcGCGCCc -3'
miRNA:   3'- cCACG-----UGGUGC-----CCGCA---GCAGcCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.