miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25121 3' -60.9 NC_005336.1 + 110651 0.72 0.367375
Target:  5'- aGGgGCGCCuGCGGGUuuaauuGUCGcugUCGGCGUCg -3'
miRNA:   3'- -CCaCGUGG-UGCCCG------CAGC---AGCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 99348 0.74 0.309262
Target:  5'- cGUGCGCCGCcuccGGCGUgcgCGUCGcGCGCa -3'
miRNA:   3'- cCACGUGGUGc---CCGCA---GCAGC-CGCGg -5'
25121 3' -60.9 NC_005336.1 + 39693 0.73 0.316127
Target:  5'- cGUGCGCgGCGGGCGccUCGcCGccGCGCUg -3'
miRNA:   3'- cCACGUGgUGCCCGC--AGCaGC--CGCGG- -5'
25121 3' -60.9 NC_005336.1 + 60254 0.73 0.323107
Target:  5'- aGGUGCggguugagGCUugGGcGgGUCGUCGGCgagGCCc -3'
miRNA:   3'- -CCACG--------UGGugCC-CgCAGCAGCCG---CGG- -5'
25121 3' -60.9 NC_005336.1 + 68425 0.73 0.337409
Target:  5'- --cGCGCCcccgcuGCGGGCG-CGgcuagUGGCGCCg -3'
miRNA:   3'- ccaCGUGG------UGCCCGCaGCa----GCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 131830 0.73 0.337409
Target:  5'- --cGCaACCACGuGGCgGUCGcCGGCGCg -3'
miRNA:   3'- ccaCG-UGGUGC-CCG-CAGCaGCCGCGg -5'
25121 3' -60.9 NC_005336.1 + 68126 0.72 0.359714
Target:  5'- cGGcUGCGCCGCuccGGGUucCG-CGGCGCCg -3'
miRNA:   3'- -CC-ACGUGGUG---CCCGcaGCaGCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 13856 0.72 0.367375
Target:  5'- --aGCAgCACGucGGUGUCGcacggCGGCGCCg -3'
miRNA:   3'- ccaCGUgGUGC--CCGCAGCa----GCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 22033 0.72 0.367375
Target:  5'- cGUGC-CCGCGGaCaUCGUUGGCGUCg -3'
miRNA:   3'- cCACGuGGUGCCcGcAGCAGCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 79027 0.74 0.309262
Target:  5'- -aUGC-CCACGGGCacGUCGUCGauGCGCa -3'
miRNA:   3'- ccACGuGGUGCCCG--CAGCAGC--CGCGg -5'
25121 3' -60.9 NC_005336.1 + 135940 0.74 0.302511
Target:  5'- cGGcGCGCgacgcgCGCGGGCGcUCGgcggCGGCGCUg -3'
miRNA:   3'- -CCaCGUG------GUGCCCGC-AGCa---GCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 56337 0.74 0.302511
Target:  5'- uGG-GCACCuACGGGCagcagcgCGUgaaCGGCGCCg -3'
miRNA:   3'- -CCaCGUGG-UGCCCGca-----GCA---GCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 15013 0.78 0.173118
Target:  5'- --cGCGCggcgCGCGGGCGgCGUCGGCGCg -3'
miRNA:   3'- ccaCGUG----GUGCCCGCaGCAGCCGCGg -5'
25121 3' -60.9 NC_005336.1 + 19764 0.76 0.214627
Target:  5'- cGGUGcCGCC-CGcGGCGaCGgCGGCGCCg -3'
miRNA:   3'- -CCAC-GUGGuGC-CCGCaGCaGCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 83778 0.76 0.230255
Target:  5'- cGGUGaCGCgGCGGGCGccuugaUCGUCGGgcagcuggaCGCCg -3'
miRNA:   3'- -CCAC-GUGgUGCCCGC------AGCAGCC---------GCGG- -5'
25121 3' -60.9 NC_005336.1 + 6605 0.75 0.246833
Target:  5'- -aUGCGuCCACGGcGCGUgCGUCuGCGCCc -3'
miRNA:   3'- ccACGU-GGUGCC-CGCA-GCAGcCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 27539 0.75 0.258426
Target:  5'- aGGUaCACgAC-GGCGUUGUCGGCGCg -3'
miRNA:   3'- -CCAcGUGgUGcCCGCAGCAGCCGCGg -5'
25121 3' -60.9 NC_005336.1 + 95831 0.75 0.258426
Target:  5'- --cGCGCCAUGgcGGCGUCcgugggCGGCGCCg -3'
miRNA:   3'- ccaCGUGGUGC--CCGCAGca----GCCGCGG- -5'
25121 3' -60.9 NC_005336.1 + 127221 0.74 0.282941
Target:  5'- -aUGCGCCACGGcGCGcgCGUCaGCGaCCu -3'
miRNA:   3'- ccACGUGGUGCC-CGCa-GCAGcCGC-GG- -5'
25121 3' -60.9 NC_005336.1 + 49491 0.74 0.302511
Target:  5'- --aGCACCACc-GCGUCGUUGGUGCUc -3'
miRNA:   3'- ccaCGUGGUGccCGCAGCAGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.