miRNA display CGI


Results 1 - 20 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25121 5' -52.2 NC_005336.1 + 28338 0.66 0.977215
Target:  5'- aUGUCGUGCaggaggugcgcuucaAgcggGAGAGCCUcaucgaGGCGCc -3'
miRNA:   3'- aAUAGCGCG---------------Ua---CUUUCGGAug----CCGCG- -5'
25121 5' -52.2 NC_005336.1 + 91745 0.66 0.976196
Target:  5'- ---cCGgGCGcGAAAGCCgaucucgGCGGgGCc -3'
miRNA:   3'- aauaGCgCGUaCUUUCGGa------UGCCgCG- -5'
25121 5' -52.2 NC_005336.1 + 90061 0.66 0.976196
Target:  5'- gUGUCGCGCAcGuagcgcGUCUucagcGCGGCGUu -3'
miRNA:   3'- aAUAGCGCGUaCuuu---CGGA-----UGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 93599 0.66 0.976196
Target:  5'- ---aCGCGCgaggaccucGUGGAGGCgCUggcGCGGCuGCg -3'
miRNA:   3'- aauaGCGCG---------UACUUUCG-GA---UGCCG-CG- -5'
25121 5' -52.2 NC_005336.1 + 48583 0.66 0.976196
Target:  5'- -gAUCGCGCccgGAaaGAGCCUguucugggACGGaauCGCg -3'
miRNA:   3'- aaUAGCGCGua-CU--UUCGGA--------UGCC---GCG- -5'
25121 5' -52.2 NC_005336.1 + 131246 0.66 0.976196
Target:  5'- ----gGCGCcgacGUGAAcauGCCggGCGGCGUg -3'
miRNA:   3'- aauagCGCG----UACUUu--CGGa-UGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 62640 0.66 0.976196
Target:  5'- --cUCGCGCcc---GGUCUGCGaGCGCc -3'
miRNA:   3'- aauAGCGCGuacuuUCGGAUGC-CGCG- -5'
25121 5' -52.2 NC_005336.1 + 9217 0.66 0.976196
Target:  5'- -gAUgGCGCAUGGccGCgaUgcgugcacggaGCGGCGCg -3'
miRNA:   3'- aaUAgCGCGUACUuuCGg-A-----------UGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 20250 0.66 0.976196
Target:  5'- ---aCGCGUucuguggcGUGAucGCCaGgGGCGCa -3'
miRNA:   3'- aauaGCGCG--------UACUuuCGGaUgCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 64708 0.66 0.976196
Target:  5'- ---aCGCGCGc--GGGCCcgcgcgcGCGGCGCg -3'
miRNA:   3'- aauaGCGCGUacuUUCGGa------UGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 24276 0.66 0.976196
Target:  5'- -gGUCGUGCAcgUGGccgAGGaCCUcGCGGaCGCg -3'
miRNA:   3'- aaUAGCGCGU--ACU---UUC-GGA-UGCC-GCG- -5'
25121 5' -52.2 NC_005336.1 + 66126 0.66 0.976196
Target:  5'- -aGUCGaGCGUGAGcuCgUGCGGCuGCa -3'
miRNA:   3'- aaUAGCgCGUACUUucGgAUGCCG-CG- -5'
25121 5' -52.2 NC_005336.1 + 114399 0.66 0.976196
Target:  5'- -gAUCGaCGCGgcgguGGCCgGCGaGCGCa -3'
miRNA:   3'- aaUAGC-GCGUacuu-UCGGaUGC-CGCG- -5'
25121 5' -52.2 NC_005336.1 + 133351 0.66 0.973502
Target:  5'- -gAUCuCGCcgGAGgcGGCg-GCGGCGCu -3'
miRNA:   3'- aaUAGcGCGuaCUU--UCGgaUGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 89030 0.66 0.973502
Target:  5'- ---cCGCGCAgugGAgcguGAGCac-CGGCGCc -3'
miRNA:   3'- aauaGCGCGUa--CU----UUCGgauGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 95830 0.66 0.973502
Target:  5'- ---gCGCGcCAUGgcGGCgUccguggGCGGCGCc -3'
miRNA:   3'- aauaGCGC-GUACuuUCGgA------UGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 39062 0.66 0.973502
Target:  5'- -gGUCGCGCAgcacgccguaGAcaucgcccGCCU-CGGCGCu -3'
miRNA:   3'- aaUAGCGCGUa---------CUuu------CGGAuGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 97063 0.66 0.973502
Target:  5'- ---gCGCGCAUGcgcGGCgUGCGGguggaCGCg -3'
miRNA:   3'- aauaGCGCGUACuu-UCGgAUGCC-----GCG- -5'
25121 5' -52.2 NC_005336.1 + 125988 0.66 0.973502
Target:  5'- ---cCGCGCGaggagcUGgcGGCCUuCGcGCGCg -3'
miRNA:   3'- aauaGCGCGU------ACuuUCGGAuGC-CGCG- -5'
25121 5' -52.2 NC_005336.1 + 133203 0.66 0.973502
Target:  5'- ---aCGCGcCGUGGAcGCaUACaGGCGCa -3'
miRNA:   3'- aauaGCGC-GUACUUuCGgAUG-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.