miRNA display CGI


Results 1 - 20 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25121 5' -52.2 NC_005336.1 + 88409 1.11 0.004003
Target:  5'- uUUAUCGCGCAUGAAAGCCUACGGCGCg -3'
miRNA:   3'- -AAUAGCGCGUACUUUCGGAUGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 97443 0.83 0.23855
Target:  5'- ---cCGCGCAUGGAGGCCgagaGCGcGCGCg -3'
miRNA:   3'- aauaGCGCGUACUUUCGGa---UGC-CGCG- -5'
25121 5' -52.2 NC_005336.1 + 13433 0.79 0.385946
Target:  5'- ---gCGCGCccGAAGGCCgccaGCGGCGCc -3'
miRNA:   3'- aauaGCGCGuaCUUUCGGa---UGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 115582 0.79 0.403629
Target:  5'- aUGagGUGCAUGcAGGCgUACGGCGCg -3'
miRNA:   3'- aAUagCGCGUACuUUCGgAUGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 99754 0.79 0.403629
Target:  5'- --cUCGCGCGaGGAGGCgCUGCGGCuGCu -3'
miRNA:   3'- aauAGCGCGUaCUUUCG-GAUGCCG-CG- -5'
25121 5' -52.2 NC_005336.1 + 111298 0.77 0.489118
Target:  5'- -cGUCGCG-AUGGAGGCCacuggaacgACGGCGCc -3'
miRNA:   3'- aaUAGCGCgUACUUUCGGa--------UGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 84760 0.77 0.489118
Target:  5'- ---gCGCGCGUGGagGAGCUUAaGGCGCg -3'
miRNA:   3'- aauaGCGCGUACU--UUCGGAUgCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 8976 0.77 0.509267
Target:  5'- ---aCGCGC-UGAugAGGCCguggACGGCGCg -3'
miRNA:   3'- aauaGCGCGuACU--UUCGGa---UGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 101592 0.76 0.516403
Target:  5'- ---gCGCGCAUGAAGGCgUACGccucgggcgugaccGCGCg -3'
miRNA:   3'- aauaGCGCGUACUUUCGgAUGC--------------CGCG- -5'
25121 5' -52.2 NC_005336.1 + 96418 0.76 0.519473
Target:  5'- -gGUCGCGCGU---GGCuUUGCGGCGCu -3'
miRNA:   3'- aaUAGCGCGUAcuuUCG-GAUGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 83123 0.76 0.529758
Target:  5'- -aGUCGUGCAUGGAGGUCaUGCGGUccacagGCa -3'
miRNA:   3'- aaUAGCGCGUACUUUCGG-AUGCCG------CG- -5'
25121 5' -52.2 NC_005336.1 + 64914 0.76 0.550543
Target:  5'- cUGUUGCGCGacgccGAGAGCa-GCGGCGCg -3'
miRNA:   3'- aAUAGCGCGUa----CUUUCGgaUGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 30395 0.76 0.550543
Target:  5'- ---gCGCGCGcGAGAGCUUcuCGGCGCa -3'
miRNA:   3'- aauaGCGCGUaCUUUCGGAu-GCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 36249 0.76 0.56103
Target:  5'- ---aCGCGCGgcGGAGGCCgcgcuCGGCGCg -3'
miRNA:   3'- aauaGCGCGUa-CUUUCGGau---GCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 42764 0.75 0.571571
Target:  5'- -aGUCGCGCAguuucggGAAGGCC-ACGccGCGCg -3'
miRNA:   3'- aaUAGCGCGUa------CUUUCGGaUGC--CGCG- -5'
25121 5' -52.2 NC_005336.1 + 14635 0.75 0.571571
Target:  5'- -aGUCGCagaGCAUGGAGGCgCUGC-GCGCg -3'
miRNA:   3'- aaUAGCG---CGUACUUUCG-GAUGcCGCG- -5'
25121 5' -52.2 NC_005336.1 + 18232 0.75 0.591722
Target:  5'- -aGUCGCuCAUGGAcGCCgggcgcaUGCGGCGCg -3'
miRNA:   3'- aaUAGCGcGUACUUuCGG-------AUGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 115022 0.75 0.592786
Target:  5'- -gAUCGCGaaCGUGAAGuCCUACGaGCGCg -3'
miRNA:   3'- aaUAGCGC--GUACUUUcGGAUGC-CGCG- -5'
25121 5' -52.2 NC_005336.1 + 70613 0.75 0.592786
Target:  5'- ---cCGCGC--GAAGGCCUGCGuGUGCa -3'
miRNA:   3'- aauaGCGCGuaCUUUCGGAUGC-CGCG- -5'
25121 5' -52.2 NC_005336.1 + 44299 0.74 0.624823
Target:  5'- --cUCGCGCAgacugcgcagcUGcuGGgCUACGGCGCg -3'
miRNA:   3'- aauAGCGCGU-----------ACuuUCgGAUGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.