miRNA display CGI


Results 1 - 20 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25121 5' -52.2 NC_005336.1 + 3045 0.68 0.938841
Target:  5'- -cAUCccuaCGCcgGcAAGCCgaaggGCGGCGCa -3'
miRNA:   3'- aaUAGc---GCGuaCuUUCGGa----UGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 3045 0.68 0.938841
Target:  5'- -cAUCccuaCGCcgGcAAGCCgaaggGCGGCGCa -3'
miRNA:   3'- aaUAGc---GCGuaCuUUCGGa----UGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 3873 0.71 0.808929
Target:  5'- -cGUCGCGCGccGAGGCC-GCGGCcccGCg -3'
miRNA:   3'- aaUAGCGCGUacUUUCGGaUGCCG---CG- -5'
25121 5' -52.2 NC_005336.1 + 3873 0.71 0.808929
Target:  5'- -cGUCGCGCGccGAGGCC-GCGGCcccGCg -3'
miRNA:   3'- aaUAGCGCGUacUUUCGGaUGCCG---CG- -5'
25121 5' -52.2 NC_005336.1 + 3922 0.72 0.730563
Target:  5'- ---cCGCGCGUccaGcgGGCCgccGCGGCGCa -3'
miRNA:   3'- aauaGCGCGUA---CuuUCGGa--UGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 5645 0.67 0.9526
Target:  5'- --cUCGCGCGcGAcggcGAGCCUguccGCGGC-Cg -3'
miRNA:   3'- aauAGCGCGUaCU----UUCGGA----UGCCGcG- -5'
25121 5' -52.2 NC_005336.1 + 6075 0.72 0.760937
Target:  5'- ----aGCGCGUGGAAGCCcggguccuccGCGGCGa -3'
miRNA:   3'- aauagCGCGUACUUUCGGa---------UGCCGCg -5'
25121 5' -52.2 NC_005336.1 + 6590 0.68 0.910719
Target:  5'- gUGUCGUGCGccUGuauGCgUccACGGCGCg -3'
miRNA:   3'- aAUAGCGCGU--ACuuuCGgA--UGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 6726 0.67 0.943683
Target:  5'- ---gCGCGCAUGAGcAGCagcaGCGuGUGCa -3'
miRNA:   3'- aauaGCGCGUACUU-UCGga--UGC-CGCG- -5'
25121 5' -52.2 NC_005336.1 + 7910 0.7 0.844232
Target:  5'- -cGUCcaGCGCGUgcucGAGAGCCUGCGcgaccacagcuGCGCu -3'
miRNA:   3'- aaUAG--CGCGUA----CUUUCGGAUGC-----------CGCG- -5'
25121 5' -52.2 NC_005336.1 + 8276 0.68 0.916865
Target:  5'- --cUCGCGCAUGAc-GCUcGCgcgcgGGCGCg -3'
miRNA:   3'- aauAGCGCGUACUuuCGGaUG-----CCGCG- -5'
25121 5' -52.2 NC_005336.1 + 8520 0.67 0.960514
Target:  5'- gUAagGCagGCGUGuagcGCCgUGCGGCGCa -3'
miRNA:   3'- aAUagCG--CGUACuuu-CGG-AUGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 8846 0.68 0.928375
Target:  5'- gUGUCGCGUGUGcAAGUacaggugcaGCGGCGUc -3'
miRNA:   3'- aAUAGCGCGUACuUUCGga-------UGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 8976 0.77 0.509267
Target:  5'- ---aCGCGC-UGAugAGGCCguggACGGCGCg -3'
miRNA:   3'- aauaGCGCGuACU--UUCGGa---UGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 9217 0.66 0.976196
Target:  5'- -gAUgGCGCAUGGccGCgaUgcgugcacggaGCGGCGCg -3'
miRNA:   3'- aaUAgCGCGUACUuuCGg-A-----------UGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 9586 0.66 0.967466
Target:  5'- --cUCGCGCAgcccgcgGAAGGCCgccAUGuCGCa -3'
miRNA:   3'- aauAGCGCGUa------CUUUCGGa--UGCcGCG- -5'
25121 5' -52.2 NC_005336.1 + 10379 0.66 0.964108
Target:  5'- -cGUCGCGgGgggGcgGGCUgucuucgaagGCGGCGCg -3'
miRNA:   3'- aaUAGCGCgUa--CuuUCGGa---------UGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 11498 0.66 0.968744
Target:  5'- -cAUCGCGguUaggcgcucgaccagcGAGGaCUUGCGGCGCa -3'
miRNA:   3'- aaUAGCGCguA---------------CUUUcGGAUGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 11795 0.74 0.656914
Target:  5'- --cUCGCGCGUGGccGCgCU-CGGCGUg -3'
miRNA:   3'- aauAGCGCGUACUuuCG-GAuGCCGCG- -5'
25121 5' -52.2 NC_005336.1 + 12245 0.71 0.826968
Target:  5'- aUGUCGCGCGcGAGcgGGUCUGCGccCGCg -3'
miRNA:   3'- aAUAGCGCGUaCUU--UCGGAUGCc-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.