miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25123 5' -54.7 NC_005336.1 + 53685 0.66 0.9455
Target:  5'- cUGcGCGUGGugcgcuuccugcgccGGAACAUGUUCacGGGCGu -3'
miRNA:   3'- -ACuUGCACC---------------CCUUGUACAGGc-UCCGC- -5'
25123 5' -54.7 NC_005336.1 + 114512 0.66 0.943702
Target:  5'- gGcGCGUGGGGcGC-UGUCUgGAGcGCGu -3'
miRNA:   3'- aCuUGCACCCCuUGuACAGG-CUC-CGC- -5'
25123 5' -54.7 NC_005336.1 + 79945 0.67 0.905957
Target:  5'- ---cCGUGGGcGcGCGgugGUCCGuGGCGa -3'
miRNA:   3'- acuuGCACCC-CuUGUa--CAGGCuCCGC- -5'
25123 5' -54.7 NC_005336.1 + 133638 0.67 0.905957
Target:  5'- cGAGCGcUGGGGccACGUGUUCaaacgcucgGAGGCc -3'
miRNA:   3'- aCUUGC-ACCCCu-UGUACAGG---------CUCCGc -5'
25123 5' -54.7 NC_005336.1 + 10597 0.67 0.905957
Target:  5'- uUGAGCGaGGGGAGgAcGaCCGcGGCGg -3'
miRNA:   3'- -ACUUGCaCCCCUUgUaCaGGCuCCGC- -5'
25123 5' -54.7 NC_005336.1 + 57457 0.67 0.893007
Target:  5'- gUGAAggaGUGGGGcagcGACAUGaCCGuggaGGGCGa -3'
miRNA:   3'- -ACUUg--CACCCC----UUGUACaGGC----UCCGC- -5'
25123 5' -54.7 NC_005336.1 + 118479 0.68 0.886182
Target:  5'- -cAACGgGGcaaccGGAGCAuccggccggcgaUGUCCGAGGCGu -3'
miRNA:   3'- acUUGCaCC-----CCUUGU------------ACAGGCUCCGC- -5'
25123 5' -54.7 NC_005336.1 + 10375 0.68 0.87185
Target:  5'- aGGGCGUcgcgGGGGGGCGggcUGUCuuCGAaGGCGg -3'
miRNA:   3'- aCUUGCA----CCCCUUGU---ACAG--GCU-CCGC- -5'
25123 5' -54.7 NC_005336.1 + 15991 0.68 0.87185
Target:  5'- aGAAgGUGGcgaggcugugcaGGGGCGUGuuUCCGAGGUc -3'
miRNA:   3'- aCUUgCACC------------CCUUGUAC--AGGCUCCGc -5'
25123 5' -54.7 NC_005336.1 + 60305 0.68 0.864353
Target:  5'- -cAGCGUGGGGAACAccuccuugGUcCCGcGGCc -3'
miRNA:   3'- acUUGCACCCCUUGUa-------CA-GGCuCCGc -5'
25123 5' -54.7 NC_005336.1 + 19996 0.7 0.788148
Target:  5'- aGggUGUGGGGugag-GUgCGAGGCu -3'
miRNA:   3'- aCuuGCACCCCuuguaCAgGCUCCGc -5'
25123 5' -54.7 NC_005336.1 + 119394 0.7 0.759871
Target:  5'- gUGGGCGUGGGcGAGCucuUCC-AGGCGc -3'
miRNA:   3'- -ACUUGCACCC-CUUGuacAGGcUCCGC- -5'
25123 5' -54.7 NC_005336.1 + 113647 0.7 0.750202
Target:  5'- cGAACGgaguGAACGUGUCCGuGGCa -3'
miRNA:   3'- aCUUGCacccCUUGUACAGGCuCCGc -5'
25123 5' -54.7 NC_005336.1 + 115773 0.7 0.750202
Target:  5'- cUGAGCGUGGGcaccAugAUGUUCGcGGGCa -3'
miRNA:   3'- -ACUUGCACCCc---UugUACAGGC-UCCGc -5'
25123 5' -54.7 NC_005336.1 + 43285 0.72 0.690307
Target:  5'- gGAGCGcgugcagcacUGGauGAGCGUGUCCGAGaGCGg -3'
miRNA:   3'- aCUUGC----------ACCc-CUUGUACAGGCUC-CGC- -5'
25123 5' -54.7 NC_005336.1 + 18286 0.72 0.680097
Target:  5'- cGAGCGgGGGGAGCGcaagGUCCGcgcaAGGgGg -3'
miRNA:   3'- aCUUGCaCCCCUUGUa---CAGGC----UCCgC- -5'
25123 5' -54.7 NC_005336.1 + 97606 0.73 0.618306
Target:  5'- --cGCGUGGuGAACGUGUCCGuGGUc -3'
miRNA:   3'- acuUGCACCcCUUGUACAGGCuCCGc -5'
25123 5' -54.7 NC_005336.1 + 86276 1.1 0.003416
Target:  5'- uUGAACGUGGGGAACAUGUCCGAGGCGa -3'
miRNA:   3'- -ACUUGCACCCCUUGUACAGGCUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.