miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25128 5' -55.3 NC_005336.1 + 57061 0.66 0.927256
Target:  5'- gGCGgcGGcacgcccguGGGCauCAUGUCCGCGcAGGUGc -3'
miRNA:   3'- -UGCauCC---------UCCG--GUACAGGUGC-UUCGC- -5'
25128 5' -55.3 NC_005336.1 + 65592 0.66 0.927256
Target:  5'- cGCG-GGcGAGGCCGUGg--ACGAAGCc -3'
miRNA:   3'- -UGCaUC-CUCCGGUACaggUGCUUCGc -5'
25128 5' -55.3 NC_005336.1 + 136323 0.66 0.921777
Target:  5'- cGCGgAGGcGGGCCccGUCCGCGcgaacGGCu -3'
miRNA:   3'- -UGCaUCC-UCCGGuaCAGGUGCu----UCGc -5'
25128 5' -55.3 NC_005336.1 + 10377 0.66 0.921777
Target:  5'- gGCGUcgcgGGGGGGCgGgcUGUCUuCGAAGgCGg -3'
miRNA:   3'- -UGCA----UCCUCCGgU--ACAGGuGCUUC-GC- -5'
25128 5' -55.3 NC_005336.1 + 136323 0.66 0.921777
Target:  5'- cGCGgAGGcGGGCCccGUCCGCGcgaacGGCu -3'
miRNA:   3'- -UGCaUCC-UCCGGuaCAGGUGCu----UCGc -5'
25128 5' -55.3 NC_005336.1 + 78591 0.66 0.921777
Target:  5'- aGCGUc-GAGGUCAccgaGUCCACGcuGCGg -3'
miRNA:   3'- -UGCAucCUCCGGUa---CAGGUGCuuCGC- -5'
25128 5' -55.3 NC_005336.1 + 77810 0.66 0.916054
Target:  5'- uCGU-GGAcGCCAUGgCCGCGGAcGCGc -3'
miRNA:   3'- uGCAuCCUcCGGUACaGGUGCUU-CGC- -5'
25128 5' -55.3 NC_005336.1 + 95397 0.66 0.916054
Target:  5'- cGCGUugaAGaacauGGCCGUG-CCGCGcAAGCGg -3'
miRNA:   3'- -UGCA---UCcu---CCGGUACaGGUGC-UUCGC- -5'
25128 5' -55.3 NC_005336.1 + 5922 0.66 0.916054
Target:  5'- gGCGUcGGGGGC---GUCCGCGGcGGCa -3'
miRNA:   3'- -UGCAuCCUCCGguaCAGGUGCU-UCGc -5'
25128 5' -55.3 NC_005336.1 + 455 0.66 0.910088
Target:  5'- cGCGUgccgcGGGcGGCCGcgcGUCCGCGAcggccccgcuaaAGCGu -3'
miRNA:   3'- -UGCA-----UCCuCCGGUa--CAGGUGCU------------UCGC- -5'
25128 5' -55.3 NC_005336.1 + 83125 0.66 0.910088
Target:  5'- uCGUGcauGGAGGUCAUgcgGUCCAC-AGGCa -3'
miRNA:   3'- uGCAU---CCUCCGGUA---CAGGUGcUUCGc -5'
25128 5' -55.3 NC_005336.1 + 58796 0.66 0.910088
Target:  5'- uCGgAGGAGGUCA--UCCGCGAccuGCGc -3'
miRNA:   3'- uGCaUCCUCCGGUacAGGUGCUu--CGC- -5'
25128 5' -55.3 NC_005336.1 + 18288 0.66 0.910088
Target:  5'- aGCGggGGGAGcGCaagGUCCGCGcaagggggGAGCGa -3'
miRNA:   3'- -UGCa-UCCUC-CGguaCAGGUGC--------UUCGC- -5'
25128 5' -55.3 NC_005336.1 + 455 0.66 0.910088
Target:  5'- cGCGUgccgcGGGcGGCCGcgcGUCCGCGAcggccccgcuaaAGCGu -3'
miRNA:   3'- -UGCA-----UCCuCCGGUa--CAGGUGCU------------UCGC- -5'
25128 5' -55.3 NC_005336.1 + 100014 0.66 0.903882
Target:  5'- cACGUuuAGGAcgacuGCgagCAUGUCCACGgcGCGg -3'
miRNA:   3'- -UGCA--UCCUc----CG---GUACAGGUGCuuCGC- -5'
25128 5' -55.3 NC_005336.1 + 115726 0.66 0.897437
Target:  5'- cCGUAcGAGGCCGUGgcgcacCCGCGccGCu -3'
miRNA:   3'- uGCAUcCUCCGGUACa-----GGUGCuuCGc -5'
25128 5' -55.3 NC_005336.1 + 95666 0.66 0.897437
Target:  5'- cGCGUAGGuGuCCAgcgCCGCGuAGCGg -3'
miRNA:   3'- -UGCAUCCuCcGGUacaGGUGCuUCGC- -5'
25128 5' -55.3 NC_005336.1 + 50517 0.67 0.890076
Target:  5'- cGCGgcGGaAGGCC-UGUCgGgacgcgcCGAAGCGg -3'
miRNA:   3'- -UGCauCC-UCCGGuACAGgU-------GCUUCGC- -5'
25128 5' -55.3 NC_005336.1 + 53592 0.67 0.869342
Target:  5'- cGCGUGGGcGGGCg----CCGCGAGGCc -3'
miRNA:   3'- -UGCAUCC-UCCGguacaGGUGCUUCGc -5'
25128 5' -55.3 NC_005336.1 + 88931 0.67 0.869342
Target:  5'- cUGUGGccGAGGCCuucgacGUCCGCGccgaGAGCGg -3'
miRNA:   3'- uGCAUC--CUCCGGua----CAGGUGC----UUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.