miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25131 5' -53.4 NC_005336.1 + 50357 0.7 0.860455
Target:  5'- gCGUCCUCGAagcGGUCGuuucUGUCgCC-GCg -3'
miRNA:   3'- -GCAGGAGCU---CCAGCuu--AUAGgGGuCG- -5'
25131 5' -53.4 NC_005336.1 + 72475 0.7 0.852623
Target:  5'- gGUCCaCGAGGUCGAAgccguUGUCCgCgaagAGCu -3'
miRNA:   3'- gCAGGaGCUCCAGCUU-----AUAGGgG----UCG- -5'
25131 5' -53.4 NC_005336.1 + 16719 0.7 0.852623
Target:  5'- aCGUCCUCGAcGGUCac--GUCUgCGGCc -3'
miRNA:   3'- -GCAGGAGCU-CCAGcuuaUAGGgGUCG- -5'
25131 5' -53.4 NC_005336.1 + 33395 0.7 0.852623
Target:  5'- gCGUCCUUGAGcGccaCGAAUAUCUUCuGCu -3'
miRNA:   3'- -GCAGGAGCUC-Ca--GCUUAUAGGGGuCG- -5'
25131 5' -53.4 NC_005336.1 + 85533 0.71 0.819326
Target:  5'- --aCCUCGAGGUCGGAcacgcagcggAUUCCguGCu -3'
miRNA:   3'- gcaGGAGCUCCAGCUUa---------UAGGGguCG- -5'
25131 5' -53.4 NC_005336.1 + 116216 0.71 0.819326
Target:  5'- -aUCUUCGuGGUCGcggaaagCCCCGGCa -3'
miRNA:   3'- gcAGGAGCuCCAGCuuaua--GGGGUCG- -5'
25131 5' -53.4 NC_005336.1 + 47664 0.71 0.810548
Target:  5'- -uUCCUCGAGGacgCGGAgaagcUCgCCAGCg -3'
miRNA:   3'- gcAGGAGCUCCa--GCUUau---AGgGGUCG- -5'
25131 5' -53.4 NC_005336.1 + 117262 0.71 0.783255
Target:  5'- aGUCCUCGAGcaccagccCGAGcGUgCCCAGCu -3'
miRNA:   3'- gCAGGAGCUCca------GCUUaUAgGGGUCG- -5'
25131 5' -53.4 NC_005336.1 + 9046 0.71 0.783255
Target:  5'- gCGcCC-CGAGGgCGAGUcguccGUCUCCAGCg -3'
miRNA:   3'- -GCaGGaGCUCCaGCUUA-----UAGGGGUCG- -5'
25131 5' -53.4 NC_005336.1 + 79127 0.72 0.764351
Target:  5'- aGcCCUCGGGGUagcaguucgagaCGAucaccAUGUCCuCCAGCa -3'
miRNA:   3'- gCaGGAGCUCCA------------GCU-----UAUAGG-GGUCG- -5'
25131 5' -53.4 NC_005336.1 + 92147 0.72 0.744968
Target:  5'- gCGUCCUCGAGGaaGAGag-CgUCCAGCg -3'
miRNA:   3'- -GCAGGAGCUCCagCUUauaG-GGGUCG- -5'
25131 5' -53.4 NC_005336.1 + 92456 0.73 0.705067
Target:  5'- uGUCCgCGAGGUCGcgcucgggcacGAUguucAUCUCCGGCg -3'
miRNA:   3'- gCAGGaGCUCCAGC-----------UUA----UAGGGGUCG- -5'
25131 5' -53.4 NC_005336.1 + 37964 0.73 0.693891
Target:  5'- uCGUCCUUGGGGUCGGgcaacaaaaacuuGUAU-CCgAGCg -3'
miRNA:   3'- -GCAGGAGCUCCAGCU-------------UAUAgGGgUCG- -5'
25131 5' -53.4 NC_005336.1 + 101809 0.73 0.674446
Target:  5'- uCGcUCCUCGGGGaggCGGAacacGUCCuCCAGCg -3'
miRNA:   3'- -GC-AGGAGCUCCa--GCUUa---UAGG-GGUCG- -5'
25131 5' -53.4 NC_005336.1 + 51345 0.74 0.664156
Target:  5'- aCGUCgC-CGAGGUCGAugucggCCUCGGCg -3'
miRNA:   3'- -GCAG-GaGCUCCAGCUuaua--GGGGUCG- -5'
25131 5' -53.4 NC_005336.1 + 10246 0.74 0.65384
Target:  5'- aCGUUCaUGAGGUCGAGUagcGUCUgCCGGCg -3'
miRNA:   3'- -GCAGGaGCUCCAGCUUA---UAGG-GGUCG- -5'
25131 5' -53.4 NC_005336.1 + 13714 0.74 0.622819
Target:  5'- uCGUCCUCGAugccGGagucgcuaGAGUcgCCCCAGCc -3'
miRNA:   3'- -GCAGGAGCU----CCag------CUUAuaGGGGUCG- -5'
25131 5' -53.4 NC_005336.1 + 35503 0.75 0.571362
Target:  5'- gCGUCCgUCG-GG-CGggUGUCCgCCGGCc -3'
miRNA:   3'- -GCAGG-AGCuCCaGCuuAUAGG-GGUCG- -5'
25131 5' -53.4 NC_005336.1 + 54818 0.77 0.481973
Target:  5'- aGgcaCUCGGGGUCGAA-GUCgCCCGGCg -3'
miRNA:   3'- gCag-GAGCUCCAGCUUaUAG-GGGUCG- -5'
25131 5' -53.4 NC_005336.1 + 57710 0.79 0.408579
Target:  5'- uCGaCCUCGAGGacgUGAAcgugGUCCCCGGCa -3'
miRNA:   3'- -GCaGGAGCUCCa--GCUUa---UAGGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.