miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25132 5' -47.2 NC_005336.1 + 41610 0.66 0.999894
Target:  5'- ---cACAUGCUcgagcaggugcGCGAGccCCaGGACCg -3'
miRNA:   3'- guuuUGUAUGA-----------UGCUCuaGGcCCUGG- -5'
25132 5' -47.2 NC_005336.1 + 84372 0.66 0.999894
Target:  5'- -----gGUGCaGCGAGggCUGGcGGCCg -3'
miRNA:   3'- guuuugUAUGaUGCUCuaGGCC-CUGG- -5'
25132 5' -47.2 NC_005336.1 + 133621 0.66 0.999894
Target:  5'- ---cGCGcGCUGCucacauccGAGcgCUGGGGCCa -3'
miRNA:   3'- guuuUGUaUGAUG--------CUCuaGGCCCUGG- -5'
25132 5' -47.2 NC_005336.1 + 76088 0.66 0.999894
Target:  5'- cCGAGAgGUGCggUGGGAUCC-GGAUCu -3'
miRNA:   3'- -GUUUUgUAUGauGCUCUAGGcCCUGG- -5'
25132 5' -47.2 NC_005336.1 + 70566 0.66 0.999885
Target:  5'- aCGAAcgGCGUGCUggaccuggccacggGCGAGuuccucaCCGGcGACCg -3'
miRNA:   3'- -GUUU--UGUAUGA--------------UGCUCua-----GGCC-CUGG- -5'
25132 5' -47.2 NC_005336.1 + 52020 0.66 0.999862
Target:  5'- --cGGCGgccCUGCGGuGUCCaGGACCg -3'
miRNA:   3'- guuUUGUau-GAUGCUcUAGGcCCUGG- -5'
25132 5' -47.2 NC_005336.1 + 124613 0.66 0.999862
Target:  5'- -cGGACAacgACUGCGcGcgCCaGGGCCg -3'
miRNA:   3'- guUUUGUa--UGAUGCuCuaGGcCCUGG- -5'
25132 5' -47.2 NC_005336.1 + 81199 0.66 0.999862
Target:  5'- ----cCGUGCUGCGGGGggacUCCGGcgucGACUu -3'
miRNA:   3'- guuuuGUAUGAUGCUCU----AGGCC----CUGG- -5'
25132 5' -47.2 NC_005336.1 + 79849 0.66 0.999862
Target:  5'- cCGAGAUGUACUugucGCGgaucucgaAGGUCaCGGuGACCg -3'
miRNA:   3'- -GUUUUGUAUGA----UGC--------UCUAG-GCC-CUGG- -5'
25132 5' -47.2 NC_005336.1 + 49654 0.66 0.999821
Target:  5'- uCGGGGC-UGCUggACGAGGUCuCGGGcaGCUc -3'
miRNA:   3'- -GUUUUGuAUGA--UGCUCUAG-GCCC--UGG- -5'
25132 5' -47.2 NC_005336.1 + 74758 0.66 0.999821
Target:  5'- gCGAAGCAguuccgGCccaacgACGAGGUCaaGGGGCUg -3'
miRNA:   3'- -GUUUUGUa-----UGa-----UGCUCUAGg-CCCUGG- -5'
25132 5' -47.2 NC_005336.1 + 64003 0.66 0.999821
Target:  5'- gCAAGACGcGCUACGAGcgCgagagCGGcACCg -3'
miRNA:   3'- -GUUUUGUaUGAUGCUCuaG-----GCCcUGG- -5'
25132 5' -47.2 NC_005336.1 + 72338 0.66 0.999816
Target:  5'- aGGGGCGcaucuccUACUACGAGAUgCC-GGACa -3'
miRNA:   3'- gUUUUGU-------AUGAUGCUCUA-GGcCCUGg -5'
25132 5' -47.2 NC_005336.1 + 50202 0.66 0.99977
Target:  5'- --cGGCcgGCgGCGAGGUgauacgcgCCGGGACg -3'
miRNA:   3'- guuUUGuaUGaUGCUCUA--------GGCCCUGg -5'
25132 5' -47.2 NC_005336.1 + 66576 0.67 0.999629
Target:  5'- gGGGACGUAUUcgACGAGAgCCGcauGGCCg -3'
miRNA:   3'- gUUUUGUAUGA--UGCUCUaGGCc--CUGG- -5'
25132 5' -47.2 NC_005336.1 + 32413 0.67 0.999629
Target:  5'- gCAGAGCGUgacgGCUugGgGGAUgCGGGAa- -3'
miRNA:   3'- -GUUUUGUA----UGAugC-UCUAgGCCCUgg -5'
25132 5' -47.2 NC_005336.1 + 121439 0.67 0.999629
Target:  5'- --cAACAUcACUACGAGAcCCcuGACCa -3'
miRNA:   3'- guuUUGUA-UGAUGCUCUaGGccCUGG- -5'
25132 5' -47.2 NC_005336.1 + 26759 0.67 0.999629
Target:  5'- --cAGCAUgaACUGCGcg--CUGGGGCCg -3'
miRNA:   3'- guuUUGUA--UGAUGCucuaGGCCCUGG- -5'
25132 5' -47.2 NC_005336.1 + 114742 0.67 0.99962
Target:  5'- aAGGACAUGCUcugucgcgcgcugGCgGAGAaggcUCCGGGAa- -3'
miRNA:   3'- gUUUUGUAUGA-------------UG-CUCU----AGGCCCUgg -5'
25132 5' -47.2 NC_005336.1 + 124667 0.67 0.999533
Target:  5'- --cGGCGUGCUgcacccgcGCGAGccGUCCGcGGCCa -3'
miRNA:   3'- guuUUGUAUGA--------UGCUC--UAGGCcCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.