miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25133 3' -53.1 NC_005336.1 + 37539 0.66 0.967329
Target:  5'- -aGGGCuUGAAGAagaaGC-CCAGCG-GGAc -3'
miRNA:   3'- caCUCGcACUUCU----UGuGGUCGCaCCU- -5'
25133 3' -53.1 NC_005336.1 + 63083 0.66 0.96401
Target:  5'- -aGGGCGUGGAGGAguCCGuGCGccucaaGGAc -3'
miRNA:   3'- caCUCGCACUUCUUguGGU-CGCa-----CCU- -5'
25133 3' -53.1 NC_005336.1 + 21026 0.66 0.96401
Target:  5'- uGUGaAGUGUGuGGAcuGCAUUAGCG-GGAg -3'
miRNA:   3'- -CAC-UCGCACuUCU--UGUGGUCGCaCCU- -5'
25133 3' -53.1 NC_005336.1 + 110203 0.66 0.96401
Target:  5'- cGUGAGCGcGGGccACugCAG-GUGGAa -3'
miRNA:   3'- -CACUCGCaCUUcuUGugGUCgCACCU- -5'
25133 3' -53.1 NC_005336.1 + 34542 0.66 0.96401
Target:  5'- -cGAGCGgu-AGAACACCAccgGCGccaGGAu -3'
miRNA:   3'- caCUCGCacuUCUUGUGGU---CGCa--CCU- -5'
25133 3' -53.1 NC_005336.1 + 108230 0.66 0.96401
Target:  5'- cUGAGCGUGGAGGACgugcuccuGCCcGCGa--- -3'
miRNA:   3'- cACUCGCACUUCUUG--------UGGuCGCaccu -5'
25133 3' -53.1 NC_005336.1 + 59992 0.66 0.960461
Target:  5'- cUGAGCGUGGAccuGC-CCgagauaaagGGCGUGGGc -3'
miRNA:   3'- cACUCGCACUUcu-UGuGG---------UCGCACCU- -5'
25133 3' -53.1 NC_005336.1 + 123108 0.66 0.960461
Target:  5'- -gGAGCucGggGAgGCGCCGGCGgacGGAc -3'
miRNA:   3'- caCUCGcaCuuCU-UGUGGUCGCa--CCU- -5'
25133 3' -53.1 NC_005336.1 + 111328 0.66 0.958976
Target:  5'- -cGGGCGUGAAGAGCaggauguGCUugaagcgccgcacgAGCGUGcGGa -3'
miRNA:   3'- caCUCGCACUUCUUG-------UGG--------------UCGCAC-CU- -5'
25133 3' -53.1 NC_005336.1 + 53521 0.67 0.948827
Target:  5'- cUGGGCGUGGAGccggacuccgcgcgcGCGCCGGCGcugcugcaGGAg -3'
miRNA:   3'- cACUCGCACUUCu--------------UGUGGUCGCa-------CCU- -5'
25133 3' -53.1 NC_005336.1 + 29623 0.67 0.943876
Target:  5'- -aGGGCGUGGugcuggAGAACACCAccaccuGCGUcaacgaGGAg -3'
miRNA:   3'- caCUCGCACU------UCUUGUGGU------CGCA------CCU- -5'
25133 3' -53.1 NC_005336.1 + 80778 0.67 0.943876
Target:  5'- gGUGGGCGUGAucuccuggcagaAGAAgACCAGCu---- -3'
miRNA:   3'- -CACUCGCACU------------UCUUgUGGUCGcaccu -5'
25133 3' -53.1 NC_005336.1 + 77870 0.67 0.943876
Target:  5'- -aGAGCGUGGGcagcuuGAGCACCAcgaagcgcuccuGCGUGa- -3'
miRNA:   3'- caCUCGCACUU------CUUGUGGU------------CGCACcu -5'
25133 3' -53.1 NC_005336.1 + 126490 0.67 0.939112
Target:  5'- -cGGGCGUGAcggucgAGGACGCC-GCGcGGc -3'
miRNA:   3'- caCUCGCACU------UCUUGUGGuCGCaCCu -5'
25133 3' -53.1 NC_005336.1 + 59815 0.67 0.939112
Target:  5'- gGUGGGCGgcgaUGAcgccgugcGGcGCGCCAGCGUGu- -3'
miRNA:   3'- -CACUCGC----ACU--------UCuUGUGGUCGCACcu -5'
25133 3' -53.1 NC_005336.1 + 89039 0.67 0.939112
Target:  5'- -gGAGCGUGA---GCACCGGCGc--- -3'
miRNA:   3'- caCUCGCACUucuUGUGGUCGCaccu -5'
25133 3' -53.1 NC_005336.1 + 111742 0.67 0.934097
Target:  5'- -cGGGCGaGGAGccgguCACgGGCGUGGGc -3'
miRNA:   3'- caCUCGCaCUUCuu---GUGgUCGCACCU- -5'
25133 3' -53.1 NC_005336.1 + 60968 0.67 0.928827
Target:  5'- cGUGGGCGUGu-GGACcuGCCAGCGc--- -3'
miRNA:   3'- -CACUCGCACuuCUUG--UGGUCGCaccu -5'
25133 3' -53.1 NC_005336.1 + 82705 0.67 0.928827
Target:  5'- ---uGCGUGAacuucucgcAGAGCACCuGCGcGGAc -3'
miRNA:   3'- cacuCGCACU---------UCUUGUGGuCGCaCCU- -5'
25133 3' -53.1 NC_005336.1 + 19010 0.67 0.923303
Target:  5'- aUGGGCccGAAG-GCGCCGGUGUcGGAg -3'
miRNA:   3'- cACUCGcaCUUCuUGUGGUCGCA-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.