Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25133 | 3' | -53.1 | NC_005336.1 | + | 125858 | 0.67 | 0.923303 |
Target: 5'- -aGAGCGUGGAGcAGgACCAGCa---- -3' miRNA: 3'- caCUCGCACUUC-UUgUGGUCGcaccu -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 19010 | 0.67 | 0.923303 |
Target: 5'- aUGGGCccGAAG-GCGCCGGUGUcGGAg -3' miRNA: 3'- cACUCGcaCUUCuUGUGGUCGCA-CCU- -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 133091 | 0.68 | 0.917525 |
Target: 5'- aUGcGCGcgGAGGAAgGCCAGCGgcccucggUGGAg -3' miRNA: 3'- cACuCGCa-CUUCUUgUGGUCGC--------ACCU- -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 92204 | 0.68 | 0.911494 |
Target: 5'- cUGGGCuUGAAguccGAACA-CAGCGUGGGg -3' miRNA: 3'- cACUCGcACUU----CUUGUgGUCGCACCU- -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 123280 | 0.68 | 0.911494 |
Target: 5'- aUGGGCGUGcAGGACgACgAGauCGUGGAc -3' miRNA: 3'- cACUCGCACuUCUUG-UGgUC--GCACCU- -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 16864 | 0.68 | 0.905211 |
Target: 5'- -aGcAGCGUGGgcAGcGCGCgCAGCGUGGc -3' miRNA: 3'- caC-UCGCACU--UCuUGUG-GUCGCACCu -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 37468 | 0.68 | 0.905211 |
Target: 5'- -aGAGCGUGAAGGAguugGCCuucacGGCGcGGAa -3' miRNA: 3'- caCUCGCACUUCUUg---UGG-----UCGCaCCU- -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 34675 | 0.68 | 0.905211 |
Target: 5'- -cGuGCGUGGAguccaugcgcguGAGCACCGGCGagaggcucaucuUGGAg -3' miRNA: 3'- caCuCGCACUU------------CUUGUGGUCGC------------ACCU- -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 38346 | 0.68 | 0.905211 |
Target: 5'- -aGGGC-UGGAaGGCGCgCAGCGUGGGc -3' miRNA: 3'- caCUCGcACUUcUUGUG-GUCGCACCU- -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 99890 | 0.68 | 0.891901 |
Target: 5'- -cGAGCcUGGAGGagcuGCGCCgAGCgGUGGAg -3' miRNA: 3'- caCUCGcACUUCU----UGUGG-UCG-CACCU- -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 98343 | 0.69 | 0.885593 |
Target: 5'- -aGAGCGUGcuGGAACAggcgagucccagcgaCAGUGUGGAc -3' miRNA: 3'- caCUCGCACu-UCUUGUg--------------GUCGCACCU- -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 6059 | 0.69 | 0.86241 |
Target: 5'- cGUGAGCuccGAGAGCAgC-GCGUGGAa -3' miRNA: 3'- -CACUCGcacUUCUUGUgGuCGCACCU- -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 129646 | 0.7 | 0.837956 |
Target: 5'- -cGGGCGcgGAcguGAACgccGCCAGCGUGGu -3' miRNA: 3'- caCUCGCa-CUu--CUUG---UGGUCGCACCu -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 126970 | 0.7 | 0.837956 |
Target: 5'- -aGAGC--GAGGAGCGuCCGGaCGUGGAg -3' miRNA: 3'- caCUCGcaCUUCUUGU-GGUC-GCACCU- -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 119393 | 0.7 | 0.837956 |
Target: 5'- cGUGGGCGUGGGcGAGCucuuCCAggcgcuccaccGCGUGGu -3' miRNA: 3'- -CACUCGCACUU-CUUGu---GGU-----------CGCACCu -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 20232 | 0.71 | 0.792401 |
Target: 5'- gGUGGGCGcGGAGGGCgcgcacucuacaaACCAGCG-GGGc -3' miRNA: 3'- -CACUCGCaCUUCUUG-------------UGGUCGCaCCU- -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 125470 | 0.71 | 0.774342 |
Target: 5'- cUGAGCGUGcucuucuccGAGGACGCguGCGUGc- -3' miRNA: 3'- cACUCGCAC---------UUCUUGUGguCGCACcu -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 45851 | 0.71 | 0.754807 |
Target: 5'- cGUGGauuGCGUGGGcGGCGCCGGCGcgcUGGAg -3' miRNA: 3'- -CACU---CGCACUUcUUGUGGUCGC---ACCU- -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 78565 | 0.72 | 0.744861 |
Target: 5'- -gGAGCGcGAAGAagaccaaggACGCCAGCGUcGAg -3' miRNA: 3'- caCUCGCaCUUCU---------UGUGGUCGCAcCU- -5' |
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25133 | 3' | -53.1 | NC_005336.1 | + | 114785 | 0.74 | 0.599111 |
Target: 5'- cGUGGGCGUGGAGAuccuGCGCUcGC-UGGAg -3' miRNA: 3'- -CACUCGCACUUCU----UGUGGuCGcACCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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