miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25133 3' -53.1 NC_005336.1 + 20232 0.71 0.792401
Target:  5'- gGUGGGCGcGGAGGGCgcgcacucuacaaACCAGCG-GGGc -3'
miRNA:   3'- -CACUCGCaCUUCUUG-------------UGGUCGCaCCU- -5'
25133 3' -53.1 NC_005336.1 + 19010 0.67 0.923303
Target:  5'- aUGGGCccGAAG-GCGCCGGUGUcGGAg -3'
miRNA:   3'- cACUCGcaCUUCuUGUGGUCGCA-CCU- -5'
25133 3' -53.1 NC_005336.1 + 89039 0.67 0.939112
Target:  5'- -gGAGCGUGA---GCACCGGCGc--- -3'
miRNA:   3'- caCUCGCACUucuUGUGGUCGCaccu -5'
25133 3' -53.1 NC_005336.1 + 77870 0.67 0.943876
Target:  5'- -aGAGCGUGGGcagcuuGAGCACCAcgaagcgcuccuGCGUGa- -3'
miRNA:   3'- caCUCGCACUU------CUUGUGGU------------CGCACcu -5'
25133 3' -53.1 NC_005336.1 + 80778 0.67 0.943876
Target:  5'- gGUGGGCGUGAucuccuggcagaAGAAgACCAGCu---- -3'
miRNA:   3'- -CACUCGCACU------------UCUUgUGGUCGcaccu -5'
25133 3' -53.1 NC_005336.1 + 111328 0.66 0.958976
Target:  5'- -cGGGCGUGAAGAGCaggauguGCUugaagcgccgcacgAGCGUGcGGa -3'
miRNA:   3'- caCUCGCACUUCUUG-------UGG--------------UCGCAC-CU- -5'
25133 3' -53.1 NC_005336.1 + 34542 0.66 0.96401
Target:  5'- -cGAGCGgu-AGAACACCAccgGCGccaGGAu -3'
miRNA:   3'- caCUCGCacuUCUUGUGGU---CGCa--CCU- -5'
25133 3' -53.1 NC_005336.1 + 110203 0.66 0.96401
Target:  5'- cGUGAGCGcGGGccACugCAG-GUGGAa -3'
miRNA:   3'- -CACUCGCaCUUcuUGugGUCgCACCU- -5'
25133 3' -53.1 NC_005336.1 + 37539 0.66 0.967329
Target:  5'- -aGGGCuUGAAGAagaaGC-CCAGCG-GGAc -3'
miRNA:   3'- caCUCGcACUUCU----UGuGGUCGCaCCU- -5'
25133 3' -53.1 NC_005336.1 + 125858 0.67 0.923303
Target:  5'- -aGAGCGUGGAGcAGgACCAGCa---- -3'
miRNA:   3'- caCUCGCACUUC-UUgUGGUCGcaccu -5'
25133 3' -53.1 NC_005336.1 + 133091 0.68 0.917525
Target:  5'- aUGcGCGcgGAGGAAgGCCAGCGgcccucggUGGAg -3'
miRNA:   3'- cACuCGCa-CUUCUUgUGGUCGC--------ACCU- -5'
25133 3' -53.1 NC_005336.1 + 119393 0.7 0.837956
Target:  5'- cGUGGGCGUGGGcGAGCucuuCCAggcgcuccaccGCGUGGu -3'
miRNA:   3'- -CACUCGCACUU-CUUGu---GGU-----------CGCACCu -5'
25133 3' -53.1 NC_005336.1 + 126970 0.7 0.837956
Target:  5'- -aGAGC--GAGGAGCGuCCGGaCGUGGAg -3'
miRNA:   3'- caCUCGcaCUUCUUGU-GGUC-GCACCU- -5'
25133 3' -53.1 NC_005336.1 + 129646 0.7 0.837956
Target:  5'- -cGGGCGcgGAcguGAACgccGCCAGCGUGGu -3'
miRNA:   3'- caCUCGCa-CUu--CUUG---UGGUCGCACCu -5'
25133 3' -53.1 NC_005336.1 + 98343 0.69 0.885593
Target:  5'- -aGAGCGUGcuGGAACAggcgagucccagcgaCAGUGUGGAc -3'
miRNA:   3'- caCUCGCACu-UCUUGUg--------------GUCGCACCU- -5'
25133 3' -53.1 NC_005336.1 + 99890 0.68 0.891901
Target:  5'- -cGAGCcUGGAGGagcuGCGCCgAGCgGUGGAg -3'
miRNA:   3'- caCUCGcACUUCU----UGUGG-UCG-CACCU- -5'
25133 3' -53.1 NC_005336.1 + 16864 0.68 0.905211
Target:  5'- -aGcAGCGUGGgcAGcGCGCgCAGCGUGGc -3'
miRNA:   3'- caC-UCGCACU--UCuUGUG-GUCGCACCu -5'
25133 3' -53.1 NC_005336.1 + 38346 0.68 0.905211
Target:  5'- -aGGGC-UGGAaGGCGCgCAGCGUGGGc -3'
miRNA:   3'- caCUCGcACUUcUUGUG-GUCGCACCU- -5'
25133 3' -53.1 NC_005336.1 + 92204 0.68 0.911494
Target:  5'- cUGGGCuUGAAguccGAACA-CAGCGUGGGg -3'
miRNA:   3'- cACUCGcACUU----CUUGUgGUCGCACCU- -5'
25133 3' -53.1 NC_005336.1 + 80930 1.1 0.004144
Target:  5'- cGUGAGCGUGAAGAACACCAGCGUGGAg -3'
miRNA:   3'- -CACUCGCACUUCUUGUGGUCGCACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.