miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25133 5' -64.4 NC_005336.1 + 48309 0.66 0.518887
Target:  5'- uGCGCcagcucaccuucaacGGGCaaaaccUGCGCAuGGCGCGCggcagCGu -3'
miRNA:   3'- gCGCG---------------UCCG------ACGCGUcCCGCGCGa----GC- -5'
25133 5' -64.4 NC_005336.1 + 18288 0.66 0.516079
Target:  5'- cCGCGCAGGCccggcaccgcguacGCGgucagacacacggcCAGGcGCGCGCUg- -3'
miRNA:   3'- -GCGCGUCCGa-------------CGC--------------GUCC-CGCGCGAgc -5'
25133 5' -64.4 NC_005336.1 + 130607 0.66 0.515145
Target:  5'- cCGCGUGGuCUGCGCgcuggaguGGGGC-CGCUgCGa -3'
miRNA:   3'- -GCGCGUCcGACGCG--------UCCCGcGCGA-GC- -5'
25133 5' -64.4 NC_005336.1 + 16102 0.66 0.515145
Target:  5'- cCGCGU-GGUgGUGCAGcGGCGUGCg-- -3'
miRNA:   3'- -GCGCGuCCGaCGCGUC-CCGCGCGagc -5'
25133 5' -64.4 NC_005336.1 + 106318 0.66 0.515145
Target:  5'- uGCGCAGcccGCagaucuCGCAGGGgcucaucuCGCGCUCGc -3'
miRNA:   3'- gCGCGUC---CGac----GCGUCCC--------GCGCGAGC- -5'
25133 5' -64.4 NC_005336.1 + 50402 0.66 0.515145
Target:  5'- uCGCccGCcGGCUGCGCGgcGGGCGaCGUg-- -3'
miRNA:   3'- -GCG--CGuCCGACGCGU--CCCGC-GCGagc -5'
25133 5' -64.4 NC_005336.1 + 107765 0.66 0.515145
Target:  5'- cCGCGCGGGCgugauCGCGucGCGUGCUUc -3'
miRNA:   3'- -GCGCGUCCGac---GCGUccCGCGCGAGc -5'
25133 5' -64.4 NC_005336.1 + 30669 0.66 0.51421
Target:  5'- uGCGCaagaaguGGcGCUGCGUgcucuucaAGGGCGCGgcgguggcggcCUCGg -3'
miRNA:   3'- gCGCG-------UC-CGACGCG--------UCCCGCGC-----------GAGC- -5'
25133 5' -64.4 NC_005336.1 + 64899 0.66 0.509551
Target:  5'- uCGCGCuuggcgAGGCUGUugcgcgacgccgagaGCAGcGGCGCGgaCu -3'
miRNA:   3'- -GCGCG------UCCGACG---------------CGUC-CCGCGCgaGc -5'
25133 5' -64.4 NC_005336.1 + 16334 0.66 0.505836
Target:  5'- aGCGCAcGGCgcccuccGCgGCGGGGUGgCGCgUCa -3'
miRNA:   3'- gCGCGU-CCGa------CG-CGUCCCGC-GCG-AGc -5'
25133 5' -64.4 NC_005336.1 + 21127 0.66 0.505836
Target:  5'- gCGCGCcGGC-GUGCAcGGCGgGCUg- -3'
miRNA:   3'- -GCGCGuCCGaCGCGUcCCGCgCGAgc -5'
25133 5' -64.4 NC_005336.1 + 68122 0.66 0.505836
Target:  5'- gGCGC-GGCUGCGCcgcuccGGGUuccgcgGCGCcgCGa -3'
miRNA:   3'- gCGCGuCCGACGCGu-----CCCG------CGCGa-GC- -5'
25133 5' -64.4 NC_005336.1 + 60255 0.66 0.505836
Target:  5'- gGUGCGGGUUGagGCuuGGGCGgGUcgUCGg -3'
miRNA:   3'- gCGCGUCCGACg-CGu-CCCGCgCG--AGC- -5'
25133 5' -64.4 NC_005336.1 + 31050 0.66 0.505836
Target:  5'- uCGCGCAGGCggUGCGuCAGcgaGGCGaaggccaGCUUc -3'
miRNA:   3'- -GCGCGUCCG--ACGC-GUC---CCGCg------CGAGc -5'
25133 5' -64.4 NC_005336.1 + 86805 0.66 0.505836
Target:  5'- gGCGguGGC-GCGCAGGcGCuuguguccGC-CUCGa -3'
miRNA:   3'- gCGCguCCGaCGCGUCC-CG--------CGcGAGC- -5'
25133 5' -64.4 NC_005336.1 + 33226 0.66 0.505836
Target:  5'- gCGCGUguugucGGGCaccaggUGCGCGaGGCGCGCg-- -3'
miRNA:   3'- -GCGCG------UCCG------ACGCGUcCCGCGCGagc -5'
25133 5' -64.4 NC_005336.1 + 41481 0.66 0.505836
Target:  5'- uCGUGCGcGGC-GUGCGGGucCGCGCUUa -3'
miRNA:   3'- -GCGCGU-CCGaCGCGUCCc-GCGCGAGc -5'
25133 5' -64.4 NC_005336.1 + 16312 0.66 0.504909
Target:  5'- cCGCGCAGuGCacGUGCAGcGGCgucuugcGCGcCUCGc -3'
miRNA:   3'- -GCGCGUC-CGa-CGCGUC-CCG-------CGC-GAGC- -5'
25133 5' -64.4 NC_005336.1 + 58096 0.66 0.504909
Target:  5'- aGCGCgagauccAGGC-GCGCGuGGCG-GCUCGc -3'
miRNA:   3'- gCGCG-------UCCGaCGCGUcCCGCgCGAGC- -5'
25133 5' -64.4 NC_005336.1 + 7826 0.66 0.500285
Target:  5'- gGCGCAcGGCcuccgguagcgcggaUGCGCcGGcGCGCGC-Ca -3'
miRNA:   3'- gCGCGU-CCG---------------ACGCGuCC-CGCGCGaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.