miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25133 5' -64.4 NC_005336.1 + 135895 0.73 0.188908
Target:  5'- aCGCGCGgcugccgcugcugcuGGCgcgGCGCGGGGCcGCGgcCUCGg -3'
miRNA:   3'- -GCGCGU---------------CCGa--CGCGUCCCG-CGC--GAGC- -5'
25133 5' -64.4 NC_005336.1 + 135971 0.75 0.13299
Target:  5'- gGCGCu-GCUGCGCGcggcGGGCGCGCgCGg -3'
miRNA:   3'- gCGCGucCGACGCGU----CCCGCGCGaGC- -5'
25133 5' -64.4 NC_005336.1 + 12658 0.75 0.136322
Target:  5'- uGCGCGGcGCUGCGCcggGGGGUGuCGCgCGa -3'
miRNA:   3'- gCGCGUC-CGACGCG---UCCCGC-GCGaGC- -5'
25133 5' -64.4 NC_005336.1 + 97354 0.75 0.139386
Target:  5'- gGCGCGGccucgcuGCUGCGCucGGGCGaGCUCGa -3'
miRNA:   3'- gCGCGUC-------CGACGCGu-CCCGCgCGAGC- -5'
25133 5' -64.4 NC_005336.1 + 9543 0.74 0.169919
Target:  5'- cCGgGCAGGCgGCGCAGccGCGCGCggCGu -3'
miRNA:   3'- -GCgCGUCCGaCGCGUCc-CGCGCGa-GC- -5'
25133 5' -64.4 NC_005336.1 + 10531 0.73 0.174079
Target:  5'- gGCGCGGGCg--GCGGGGCuaGCGCgUCGg -3'
miRNA:   3'- gCGCGUCCGacgCGUCCCG--CGCG-AGC- -5'
25133 5' -64.4 NC_005336.1 + 109734 0.73 0.174079
Target:  5'- cCGCGCGGcGCgaucgcgGUGUAGGGCGCGUa-- -3'
miRNA:   3'- -GCGCGUC-CGa------CGCGUCCCGCGCGagc -5'
25133 5' -64.4 NC_005336.1 + 76934 0.73 0.178329
Target:  5'- uGCgGCAgcGGCgGCGCAGGcGCGCGCggCGa -3'
miRNA:   3'- gCG-CGU--CCGaCGCGUCC-CGCGCGa-GC- -5'
25133 5' -64.4 NC_005336.1 + 83179 0.73 0.182233
Target:  5'- uGCGCGGcGCUGCcggacuggcgcgaGcCAGGGCGCGCggaCGa -3'
miRNA:   3'- gCGCGUC-CGACG-------------C-GUCCCGCGCGa--GC- -5'
25133 5' -64.4 NC_005336.1 + 83920 0.76 0.123441
Target:  5'- aCG-GCGGGCacgccgGUGCGGGGCGCGC-CGg -3'
miRNA:   3'- -GCgCGUCCGa-----CGCGUCCCGCGCGaGC- -5'
25133 5' -64.4 NC_005336.1 + 48103 0.76 0.120402
Target:  5'- aCGCGCGgucgcGGCUGCGCAuGcGGUGCGC-CGg -3'
miRNA:   3'- -GCGCGU-----CCGACGCGU-C-CCGCGCGaGC- -5'
25133 5' -64.4 NC_005336.1 + 15019 0.76 0.120402
Target:  5'- gCGCGCGGGCgGCGUcGGcGCGCGCccCGg -3'
miRNA:   3'- -GCGCGUCCGaCGCGuCC-CGCGCGa-GC- -5'
25133 5' -64.4 NC_005336.1 + 136229 0.81 0.051898
Target:  5'- uGCGCAGGCUGCuc--GGCGCGCUCGc -3'
miRNA:   3'- gCGCGUCCGACGcgucCCGCGCGAGC- -5'
25133 5' -64.4 NC_005336.1 + 66678 0.79 0.068933
Target:  5'- aCGCGCGGGC--CGCuGGGCGUGCUCu -3'
miRNA:   3'- -GCGCGUCCGacGCGuCCCGCGCGAGc -5'
25133 5' -64.4 NC_005336.1 + 38339 0.79 0.07618
Target:  5'- gCGCGCgaGGGCUggaaggcGCGCAgcguGGGCGUGCUCGg -3'
miRNA:   3'- -GCGCG--UCCGA-------CGCGU----CCCGCGCGAGC- -5'
25133 5' -64.4 NC_005336.1 + 74824 0.77 0.093629
Target:  5'- gGCGUGGGCgugaugGCGCGGcuGGCGCGUUCGc -3'
miRNA:   3'- gCGCGUCCGa-----CGCGUC--CCGCGCGAGC- -5'
25133 5' -64.4 NC_005336.1 + 97814 0.77 0.093629
Target:  5'- gGcCGCGGGCgagGCGCGGcGCGUGCUCGu -3'
miRNA:   3'- gC-GCGUCCGa--CGCGUCcCGCGCGAGC- -5'
25133 5' -64.4 NC_005336.1 + 136260 0.77 0.098488
Target:  5'- gGCgGCGGGCUucGCGCucGGCGCGCUCu -3'
miRNA:   3'- gCG-CGUCCGA--CGCGucCCGCGCGAGc -5'
25133 5' -64.4 NC_005336.1 + 67826 0.77 0.101006
Target:  5'- gCGCGCGGGCgcgccGCGguGGuCGCGCUCc -3'
miRNA:   3'- -GCGCGUCCGa----CGCguCCcGCGCGAGc -5'
25133 5' -64.4 NC_005336.1 + 75097 0.76 0.114532
Target:  5'- gCGCGCGGGCccGCGCGcguccgccGGGCGCGC-Ca -3'
miRNA:   3'- -GCGCGUCCGa-CGCGU--------CCCGCGCGaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.